A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1407.7
nTPM
Monaco:
204.0
nTPM
Schmiedel:
236.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1407.7
HPA sample
nTPM
NK-cell nTPM: 1407.7
Samples: 6
Max nTPM: 1884.6
Min nTPM: 857.8
P10809_1013
1884.6
P10809_1033
1444.5
P10809_1052
1352.6
P10809_1071
1493.2
P10809_1093
857.8
P10809_1103
1413.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
204.0
Monaco sample
nTPM
NK-cell nTPM: 204.1
Samples: 4
Max nTPM: 226.2
Min nTPM: 169.7
RHH5316_R3683
226.2
RHH5224_R3596
169.7
RHH5253_R3625
221.5
RHH5282_R3654
198.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
236.5
Schmiedel sample id
TPM
NK-cell TPM: 236.5
Samples: 90
Max TPM: 372.4
Min TPM: 169.0
NK_1
372.4
NK_2
321.6
NK_3
297.2
NK_4
296.0
NK_5
295.7
NK_6
285.3
NK_7
284.0
NK_8
281.1
NK_9
280.4
NK_10
278.5
NK_11
276.8
NK_12
275.7
NK_13
274.1
NK_14
272.8
NK_15
271.5
NK_16
268.8
NK_17
263.9
NK_18
262.3
NK_19
260.8
NK_20
259.2
NK_21
259.1
NK_22
256.4
NK_23
256.1
NK_24
255.4
NK_25
254.8
NK_26
254.1
NK_27
252.7
NK_28
251.4
NK_29
249.9
NK_30
249.8
NK_31
249.6
NK_32
248.9
NK_33
248.9
NK_34
248.0
NK_35
247.7
NK_36
246.5
NK_37
246.4
NK_38
245.3
NK_39
244.4
NK_40
243.7
NK_41
243.2
NK_42
242.7
NK_43
242.4
NK_44
238.1
NK_45
236.6
NK_46
235.0
NK_47
232.2
NK_48
231.3
NK_49
230.3
NK_50
229.7
NK_51
227.6
NK_52
227.1
NK_53
227.0
NK_54
226.6
NK_55
225.9
NK_56
224.6
NK_57
223.6
NK_58
223.5
NK_59
223.1
NK_60
221.8
NK_61
219.6
NK_62
218.2
NK_63
217.0
NK_64
215.3
NK_65
213.1
NK_66
212.5
NK_67
210.9
NK_68
209.2
NK_69
208.0
NK_70
205.4
NK_71
205.1
NK_72
204.5
NK_73
204.0
NK_74
202.8
NK_75
202.3
NK_76
202.2
NK_77
200.8
NK_78
199.4
NK_79
199.3
NK_80
198.1
NK_81
197.7
NK_82
196.5
NK_83
190.2
NK_84
187.8
NK_85
187.5
NK_86
185.9
NK_87
179.0
NK_88
177.0
NK_89
170.8
NK_90
169.0
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