A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
71.1
nTPM
Monaco:
117.5
nTPM
Schmiedel:
44.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.1
HPA sample
nTPM
Memory B-cell nTPM: 65.5
Samples: 6
Max nTPM: 78.3
Min nTPM: 54.7
P10809_1017
54.7
P10809_1025
77.3
P10809_1044
56.9
P10809_1063
61.9
P10809_1092
78.3
P10809_1105
63.9
Naive B-cell nTPM: 71.1
Samples: 6
Max nTPM: 178.1
Min nTPM: 33.2
P10809_1011
33.2
P10809_1029
56.5
P10809_1048
178.1
P10809_1067
46.8
P10809_1091
56.3
P10809_1104
55.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
117.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 115.3
Samples: 4
Max nTPM: 153.3
Min nTPM: 76.8
RHH5310_R3677
153.3
RHH5218_R3590
106.6
RHH5247_R3619
124.3
RHH5276_R3648
76.8
Naive B-cell nTPM: 108.2
Samples: 4
Max nTPM: 117.8
Min nTPM: 98.3
RHH5308_R3675
117.8
RHH5216_R3588
114.0
RHH5245_R3617
102.8
RHH5274_R3646
98.3
Non-switched memory B-cell nTPM: 105.8
Samples: 4
Max nTPM: 115.4
Min nTPM: 94.2
RHH5309_R3676
115.4
RHH5217_R3589
94.2
RHH5246_R3618
109.5
RHH5275_R3647
104.0
Plasmablast nTPM: 67.0
Samples: 4
Max nTPM: 82.0
Min nTPM: 54.9
RHH5312_R3679
67.9
RHH5220_R3592
82.0
RHH5249_R3621
63.3
RHH5278_R3650
54.9
Switched memory B-cell nTPM: 117.5
Samples: 4
Max nTPM: 141.5
Min nTPM: 88.1
RHH5311_R3678
104.4
RHH5219_R3591
141.5
RHH5248_R3620
88.1
RHH5277_R3649
136.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.6
Schmiedel sample id
TPM
Naive B-cell TPM: 44.6
Samples: 91
Max TPM: 72.7
Min TPM: 15.9
B_CELL_NAIVE_1
72.7
B_CELL_NAIVE_2
66.9
B_CELL_NAIVE_3
66.1
B_CELL_NAIVE_4
64.5
B_CELL_NAIVE_5
63.1
B_CELL_NAIVE_6
60.8
B_CELL_NAIVE_7
60.0
B_CELL_NAIVE_8
60.0
B_CELL_NAIVE_9
59.5
B_CELL_NAIVE_10
58.9
B_CELL_NAIVE_11
58.8
B_CELL_NAIVE_12
58.1
B_CELL_NAIVE_13
57.7
B_CELL_NAIVE_14
57.5
B_CELL_NAIVE_15
57.3
B_CELL_NAIVE_16
57.1
B_CELL_NAIVE_17
57.1
B_CELL_NAIVE_18
56.8
B_CELL_NAIVE_19
56.8
B_CELL_NAIVE_20
55.4
B_CELL_NAIVE_21
55.2
B_CELL_NAIVE_22
54.5
B_CELL_NAIVE_23
54.5
B_CELL_NAIVE_24
53.8
B_CELL_NAIVE_25
53.2
B_CELL_NAIVE_26
52.5
B_CELL_NAIVE_27
51.3
B_CELL_NAIVE_28
51.0
B_CELL_NAIVE_29
50.5
B_CELL_NAIVE_30
50.4
B_CELL_NAIVE_31
50.2
B_CELL_NAIVE_32
50.1
B_CELL_NAIVE_33
49.9
B_CELL_NAIVE_34
49.2
B_CELL_NAIVE_35
49.0
B_CELL_NAIVE_36
48.8
B_CELL_NAIVE_37
48.4
B_CELL_NAIVE_38
48.3
B_CELL_NAIVE_39
48.3
B_CELL_NAIVE_40
47.6
B_CELL_NAIVE_41
47.3
B_CELL_NAIVE_42
47.1
B_CELL_NAIVE_43
45.6
B_CELL_NAIVE_44
45.0
B_CELL_NAIVE_45
44.9
B_CELL_NAIVE_46
44.6
B_CELL_NAIVE_47
44.6
B_CELL_NAIVE_48
44.6
B_CELL_NAIVE_49
44.5
B_CELL_NAIVE_50
43.9
B_CELL_NAIVE_51
43.8
B_CELL_NAIVE_52
43.7
B_CELL_NAIVE_53
43.5
B_CELL_NAIVE_54
43.1
B_CELL_NAIVE_55
41.9
B_CELL_NAIVE_56
41.7
B_CELL_NAIVE_57
41.1
B_CELL_NAIVE_58
41.1
B_CELL_NAIVE_59
40.9
B_CELL_NAIVE_60
40.8
B_CELL_NAIVE_61
40.7
B_CELL_NAIVE_62
40.1
B_CELL_NAIVE_63
40.0
B_CELL_NAIVE_64
39.4
B_CELL_NAIVE_65
39.4
B_CELL_NAIVE_66
39.2
B_CELL_NAIVE_67
39.0
B_CELL_NAIVE_68
36.9
B_CELL_NAIVE_69
36.6
B_CELL_NAIVE_70
36.4
B_CELL_NAIVE_71
36.2
B_CELL_NAIVE_72
36.0
B_CELL_NAIVE_73
35.9
B_CELL_NAIVE_74
34.4
B_CELL_NAIVE_75
33.1
B_CELL_NAIVE_76
32.2
B_CELL_NAIVE_77
32.0
B_CELL_NAIVE_78
31.2
B_CELL_NAIVE_79
30.1
B_CELL_NAIVE_80
28.7
B_CELL_NAIVE_81
27.9
B_CELL_NAIVE_82
27.8
B_CELL_NAIVE_83
27.6
B_CELL_NAIVE_84
23.8
B_CELL_NAIVE_85
22.6
B_CELL_NAIVE_86
21.0
B_CELL_NAIVE_87
19.3
B_CELL_NAIVE_88
19.0
B_CELL_NAIVE_89
18.5
B_CELL_NAIVE_90
18.3
B_CELL_NAIVE_91
15.9
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The Human Protein Atlas project is funded
