A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
65.8
nTPM
Monaco:
138.5
nTPM
Schmiedel:
91.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.8
HPA sample
nTPM
NK-cell nTPM: 65.8
Samples: 6
Max nTPM: 101.8
Min nTPM: 37.4
P10809_1013
37.4
P10809_1033
101.8
P10809_1052
51.6
P10809_1071
65.0
P10809_1093
62.8
P10809_1103
76.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
138.5
Monaco sample
nTPM
NK-cell nTPM: 138.5
Samples: 4
Max nTPM: 170.5
Min nTPM: 118.1
RHH5316_R3683
145.8
RHH5224_R3596
170.5
RHH5253_R3625
119.7
RHH5282_R3654
118.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.8
Schmiedel sample id
TPM
NK-cell TPM: 91.8
Samples: 90
Max TPM: 146.2
Min TPM: 42.1
NK_1
146.2
NK_2
145.6
NK_3
141.9
NK_4
140.6
NK_5
140.4
NK_6
140.0
NK_7
139.8
NK_8
138.7
NK_9
129.2
NK_10
129.0
NK_11
126.6
NK_12
125.5
NK_13
125.4
NK_14
121.7
NK_15
120.7
NK_16
119.0
NK_17
118.6
NK_18
111.1
NK_19
110.6
NK_20
110.4
NK_21
109.6
NK_22
109.1
NK_23
108.6
NK_24
107.8
NK_25
107.1
NK_26
105.6
NK_27
105.0
NK_28
104.8
NK_29
104.8
NK_30
102.2
NK_31
101.6
NK_32
101.1
NK_33
100.9
NK_34
100.9
NK_35
100.6
NK_36
100.5
NK_37
100.2
NK_38
96.3
NK_39
96.1
NK_40
95.6
NK_41
94.3
NK_42
93.7
NK_43
93.1
NK_44
93.0
NK_45
92.8
NK_46
92.5
NK_47
90.9
NK_48
90.8
NK_49
90.4
NK_50
90.2
NK_51
88.3
NK_52
88.3
NK_53
87.6
NK_54
85.2
NK_55
84.8
NK_56
84.4
NK_57
84.0
NK_58
83.2
NK_59
83.0
NK_60
80.7
NK_61
80.4
NK_62
79.1
NK_63
78.7
NK_64
77.1
NK_65
75.4
NK_66
74.7
NK_67
73.4
NK_68
72.6
NK_69
70.7
NK_70
70.4
NK_71
69.6
NK_72
66.8
NK_73
66.3
NK_74
64.5
NK_75
64.3
NK_76
63.4
NK_77
62.9
NK_78
58.9
NK_79
57.1
NK_80
54.7
NK_81
54.4
NK_82
49.8
NK_83
49.6
NK_84
49.1
NK_85
48.8
NK_86
48.0
NK_87
44.6
NK_88
43.2
NK_89
42.8
NK_90
42.1
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