A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
116.0
nTPM
Monaco:
153.6
nTPM
Schmiedel:
63.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.0
HPA sample
nTPM
Classical monocyte nTPM: 66.7
Samples: 6
Max nTPM: 80.6
Min nTPM: 48.8
P10809_1003
54.8
P10809_1020
66.2
P10809_1039
76.7
P10809_1058
48.8
P10809_1080
80.6
P10809_1107
73.2
Intermediate monocyte nTPM: 87.3
Samples: 6
Max nTPM: 123.1
Min nTPM: 65.8
P10809_1004
65.8
P10809_1023
91.4
P10809_1042
123.1
P10809_1061
69.2
P10809_1081
74.8
P10809_1108
99.5
Non-classical monocyte nTPM: 116.0
Samples: 5
Max nTPM: 145.4
Min nTPM: 90.4
P10809_1005
90.4
P10809_1053
128.8
P10809_1072
145.4
P10809_1082
92.6
P10809_1109
122.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
153.6
Monaco sample
nTPM
Classical monocyte nTPM: 127.4
Samples: 4
Max nTPM: 140.4
Min nTPM: 116.4
RHH5313_R3680
136.1
RHH5221_R3593
140.4
RHH5250_R3622
116.4
RHH5279_R3651
116.6
Intermediate monocyte nTPM: 153.6
Samples: 4
Max nTPM: 193.7
Min nTPM: 118.4
RHH5314_R3681
157.2
RHH5222_R3594
193.7
RHH5251_R3623
118.4
RHH5280_R3652
145.2
Non-classical monocyte nTPM: 144.7
Samples: 4
Max nTPM: 161.4
Min nTPM: 116.9
RHH5315_R3682
144.0
RHH5223_R3595
161.4
RHH5252_R3624
156.4
RHH5281_R3653
116.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.2
Schmiedel sample id
TPM
Classical monocyte TPM: 58.9
Samples: 91
Max TPM: 89.9
Min TPM: 30.4
MONOCYTES_1
89.9
MONOCYTES_2
89.2
MONOCYTES_3
79.5
MONOCYTES_4
79.2
MONOCYTES_5
79.2
MONOCYTES_6
78.6
MONOCYTES_7
78.0
MONOCYTES_8
77.8
MONOCYTES_9
77.6
MONOCYTES_10
76.9
MONOCYTES_11
74.4
MONOCYTES_12
74.2
MONOCYTES_13
74.1
MONOCYTES_14
73.9
MONOCYTES_15
73.2
MONOCYTES_16
72.4
MONOCYTES_17
72.1
MONOCYTES_18
71.9
MONOCYTES_19
71.9
MONOCYTES_20
71.4
MONOCYTES_21
70.6
MONOCYTES_22
69.7
MONOCYTES_23
69.7
MONOCYTES_24
69.4
MONOCYTES_25
68.0
MONOCYTES_26
67.6
MONOCYTES_27
67.5
MONOCYTES_28
67.3
MONOCYTES_29
66.4
MONOCYTES_30
66.2
MONOCYTES_31
64.6
MONOCYTES_32
64.5
MONOCYTES_33
64.0
MONOCYTES_34
63.1
MONOCYTES_35
63.0
MONOCYTES_36
63.0
MONOCYTES_37
62.6
MONOCYTES_38
62.3
MONOCYTES_39
61.0
MONOCYTES_40
60.9
MONOCYTES_41
60.6
MONOCYTES_42
59.7
MONOCYTES_43
58.7
MONOCYTES_44
58.1
MONOCYTES_45
58.0
MONOCYTES_46
57.7
MONOCYTES_47
57.4
MONOCYTES_48
57.2
MONOCYTES_49
57.0
MONOCYTES_50
56.7
MONOCYTES_51
56.3
MONOCYTES_52
56.2
MONOCYTES_53
55.7
MONOCYTES_54
55.3
MONOCYTES_55
54.8
MONOCYTES_56
54.7
MONOCYTES_57
54.2
MONOCYTES_58
53.2
MONOCYTES_59
53.0
MONOCYTES_60
52.9
MONOCYTES_61
52.8
MONOCYTES_62
52.1
MONOCYTES_63
51.8
MONOCYTES_64
51.6
MONOCYTES_65
51.6
MONOCYTES_66
51.2
MONOCYTES_67
50.7
MONOCYTES_68
50.0
MONOCYTES_69
48.8
MONOCYTES_70
48.6
MONOCYTES_71
48.3
MONOCYTES_72
46.6
MONOCYTES_73
46.5
MONOCYTES_74
46.3
MONOCYTES_75
46.3
MONOCYTES_76
45.2
MONOCYTES_77
44.8
MONOCYTES_78
44.0
MONOCYTES_79
43.4
MONOCYTES_80
42.3
MONOCYTES_81
41.5
MONOCYTES_82
41.1
MONOCYTES_83
40.6
MONOCYTES_84
40.1
MONOCYTES_85
39.3
MONOCYTES_86
39.0
MONOCYTES_87
38.6
MONOCYTES_88
38.4
MONOCYTES_89
37.0
MONOCYTES_90
32.5
MONOCYTES_91
30.4
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Non-classical monocyte TPM: 63.2
Samples: 90
Max TPM: 103.0
Min TPM: 29.8
M2_1
103.0
M2_2
94.9
M2_3
90.5
M2_4
89.2
M2_5
88.5
M2_6
88.3
M2_7
86.1
M2_8
85.8
M2_9
83.9
M2_10
83.2
M2_11
82.3
M2_12
81.9
M2_13
81.9
M2_14
80.7
M2_15
80.0
M2_16
79.9
M2_17
77.7
M2_18
77.0
M2_19
76.9
M2_20
76.1
M2_21
75.9
M2_22
75.8
M2_23
75.4
M2_24
74.9
M2_25
74.2
M2_26
73.4
M2_27
73.3
M2_28
72.6
M2_29
70.0
M2_30
69.4
M2_31
69.3
M2_32
69.3
M2_33
69.0
M2_34
67.9
M2_35
67.7
M2_36
67.5
M2_37
67.1
M2_38
66.8
M2_39
66.8
M2_40
66.7
M2_41
66.4
M2_42
66.3
M2_43
66.0
M2_44
65.7
M2_45
65.0
M2_46
65.0
M2_47
64.6
M2_48
64.0
M2_49
61.5
M2_50
61.5
M2_51
61.2
M2_52
61.1
M2_53
59.7
M2_54
59.5
M2_55
59.3
M2_56
58.1
M2_57
58.0
M2_58
57.4
M2_59
57.3
M2_60
56.3
M2_61
55.7
M2_62
55.2
M2_63
53.7
M2_64
53.6
M2_65
53.2
M2_66
53.2
M2_67
53.1
M2_68
52.8
M2_69
51.9
M2_70
51.7
M2_71
51.0
M2_72
49.2
M2_73
49.1
M2_74
48.7
M2_75
46.2
M2_76
46.0
M2_77
45.5
M2_78
44.0
M2_79
43.6
M2_80
40.2
M2_81
40.0
M2_82
39.3
M2_83
38.7
M2_84
38.0
M2_85
37.2
M2_86
34.5
M2_87
34.3
M2_88
33.8
M2_89
33.6
M2_90
29.8
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