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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:278.0 nTPM
HPA Brain:248.6 nTPM
GTEx:278.0 nTPM
FANTOM5:164.9 Scaled Tags Per Million
Pig:114.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

248.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 248.6
2565 Male, age 75, midline 302.1
1981 Female, age 72, midline 258.4
2194 Female, age 79, both hemispheres 256.2
2816 Male, age 47, midline 223.5
2048 Male, age 55, midline 202.6
Cervical spinal cord, dorsal horn
nTPM: 196.8
2173 Female, age 72, unknown 249.5
2296 Male, age 66, both hemispheres 199.8
2721 Male, age 90, both hemispheres 194.2
2069 Male, age 47, both hemispheres 192.3
2297 Male, age 75, both hemispheres 173.4
1877 Male, age 55, unknown 171.8
Cervical spinal cord, ventral horn
nTPM: 206.7
2068 Male, age 55, unknown 238.3
2820 Female, age 79, both hemispheres 226.8
2098 Female, age 72, unknown 212.2
2809 Male, age 90, both hemispheres 199.0
2480 Male, age 75, both hemispheres 191.3
2295 Male, age 66, both hemispheres 172.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

278.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 278.0
Samples: 204

Max nTPM: 465.6
Min nTPM: 136.5
Std nTPM: 61.7
Median nTPM: 274.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 465.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 453.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 448.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 445.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 438.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 420.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 418.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 416.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 408.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 406.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 401.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 390.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 382.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 382.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 378.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 375.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 373.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 372.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 367.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 362.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 352.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 352.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 350.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 347.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 346.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 345.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 343.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 343.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 343.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 337.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 337.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 336.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 335.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 335.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 335.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 334.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 332.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 331.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 331.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 329.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 329.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 328.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 324.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 320.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 318.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 317.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 316.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 313.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 309.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 308.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 307.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 307.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 307.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 307.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 306.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 306.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 306.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 306.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 305.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 304.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 303.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 303.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 303.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 302.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 299.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 299.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 298.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 296.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 296.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 296.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 295.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 295.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 294.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 294.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 291.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 291.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 290.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 289.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 289.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 289.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 289.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 288.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 286.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 285.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 285.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 284.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 283.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 282.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 281.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 280.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 278.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 278.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 278.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 278.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 278.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 277.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 276.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 276.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 276.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 275.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 275.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 275.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 274.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 273.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 272.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 269.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 269.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 268.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 266.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 265.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 264.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 264.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 264.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 262.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 262.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 262.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 261.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 260.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 260.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 260.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 258.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 256.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 256.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 255.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 255.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 254.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 252.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 252.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 251.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 251.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 250.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 249.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 249.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 247.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 247.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 246.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 246.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 246.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 243.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 243.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 243.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 240.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 240.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 240.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 239.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 239.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 238.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 238.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 238.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 237.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 236.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 235.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 234.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 234.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 233.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 233.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 232.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 231.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 231.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 231.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 231.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 231.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 230.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 230.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 229.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 229.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 224.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 224.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 222.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 221.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 221.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 220.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 217.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 216.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 215.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 214.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 213.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 212.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 212.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 212.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 210.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 207.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 205.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 204.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 201.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 201.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 201.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 200.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 199.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 199.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 199.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 197.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 195.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 192.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 189.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 188.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 181.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 174.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 174.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 167.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 161.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 157.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 150.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 136.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

164.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 164.9
FF:10181-103D1 60 years, female 228.7
FF:10159-103A6 76 years, female 101.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 96.9
Samples: 4

Max nTPM: 136.7
Min nTPM: 73.7
Sample A Female 136.7
Sample B Female 73.7
Sample C Male 84.7
Sample D Male 92.5
Ventral spinal cord
nTPM: 114.2
Samples: 4

Max nTPM: 124.9
Min nTPM: 95.5
Sample A Female 124.9
Sample B Female 122.6
Sample C Male 113.7
Sample D Male 95.5

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