A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.9
nTPM
Monaco:
59.0
nTPM
Schmiedel:
56.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.9
HPA sample
nTPM
Memory B-cell nTPM: 28.6
Samples: 6
Max nTPM: 59.0
Min nTPM: 11.6
P10809_1017
11.6
P10809_1025
23.0
P10809_1044
59.0
P10809_1063
19.7
P10809_1092
24.5
P10809_1105
33.9
Naive B-cell nTPM: 28.9
Samples: 6
Max nTPM: 71.0
Min nTPM: 10.6
P10809_1011
10.6
P10809_1029
20.1
P10809_1048
71.0
P10809_1067
20.9
P10809_1091
29.2
P10809_1104
21.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 59.0
Samples: 4
Max nTPM: 85.7
Min nTPM: 32.5
RHH5310_R3677
44.4
RHH5218_R3590
73.4
RHH5247_R3619
85.7
RHH5276_R3648
32.5
Naive B-cell nTPM: 56.9
Samples: 4
Max nTPM: 78.4
Min nTPM: 39.7
RHH5308_R3675
50.9
RHH5216_R3588
78.4
RHH5245_R3617
39.7
RHH5274_R3646
58.6
Non-switched memory B-cell nTPM: 55.4
Samples: 4
Max nTPM: 62.8
Min nTPM: 51.7
RHH5309_R3676
51.7
RHH5217_R3589
62.8
RHH5246_R3618
53.7
RHH5275_R3647
53.4
Plasmablast nTPM: 34.5
Samples: 4
Max nTPM: 43.7
Min nTPM: 25.5
RHH5312_R3679
36.7
RHH5220_R3592
43.7
RHH5249_R3621
25.5
RHH5278_R3650
32.2
Switched memory B-cell nTPM: 56.4
Samples: 4
Max nTPM: 63.1
Min nTPM: 51.6
RHH5311_R3678
55.5
RHH5219_R3591
51.6
RHH5248_R3620
63.1
RHH5277_R3649
55.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
56.5
Schmiedel sample id
TPM
Naive B-cell TPM: 56.5
Samples: 91
Max TPM: 103.2
Min TPM: 35.6
B_CELL_NAIVE_1
103.2
B_CELL_NAIVE_2
80.1
B_CELL_NAIVE_3
76.2
B_CELL_NAIVE_4
75.7
B_CELL_NAIVE_5
75.6
B_CELL_NAIVE_6
73.1
B_CELL_NAIVE_7
71.7
B_CELL_NAIVE_8
69.1
B_CELL_NAIVE_9
68.7
B_CELL_NAIVE_10
67.2
B_CELL_NAIVE_11
66.7
B_CELL_NAIVE_12
66.6
B_CELL_NAIVE_13
65.2
B_CELL_NAIVE_14
65.1
B_CELL_NAIVE_15
63.5
B_CELL_NAIVE_16
62.7
B_CELL_NAIVE_17
62.1
B_CELL_NAIVE_18
61.8
B_CELL_NAIVE_19
61.7
B_CELL_NAIVE_20
61.7
B_CELL_NAIVE_21
61.5
B_CELL_NAIVE_22
61.4
B_CELL_NAIVE_23
61.4
B_CELL_NAIVE_24
60.6
B_CELL_NAIVE_25
59.8
B_CELL_NAIVE_26
59.5
B_CELL_NAIVE_27
59.4
B_CELL_NAIVE_28
58.7
B_CELL_NAIVE_29
58.5
B_CELL_NAIVE_30
58.4
B_CELL_NAIVE_31
58.1
B_CELL_NAIVE_32
58.0
B_CELL_NAIVE_33
58.0
B_CELL_NAIVE_34
57.8
B_CELL_NAIVE_35
57.8
B_CELL_NAIVE_36
57.7
B_CELL_NAIVE_37
57.6
B_CELL_NAIVE_38
57.6
B_CELL_NAIVE_39
57.4
B_CELL_NAIVE_40
57.3
B_CELL_NAIVE_41
57.2
B_CELL_NAIVE_42
56.8
B_CELL_NAIVE_43
56.8
B_CELL_NAIVE_44
56.6
B_CELL_NAIVE_45
56.6
B_CELL_NAIVE_46
56.3
B_CELL_NAIVE_47
56.1
B_CELL_NAIVE_48
56.0
B_CELL_NAIVE_49
56.0
B_CELL_NAIVE_50
56.0
B_CELL_NAIVE_51
55.6
B_CELL_NAIVE_52
55.4
B_CELL_NAIVE_53
55.2
B_CELL_NAIVE_54
54.8
B_CELL_NAIVE_55
54.8
B_CELL_NAIVE_56
54.6
B_CELL_NAIVE_57
54.3
B_CELL_NAIVE_58
53.6
B_CELL_NAIVE_59
53.3
B_CELL_NAIVE_60
53.0
B_CELL_NAIVE_61
52.6
B_CELL_NAIVE_62
52.5
B_CELL_NAIVE_63
52.2
B_CELL_NAIVE_64
51.6
B_CELL_NAIVE_65
51.4
B_CELL_NAIVE_66
50.6
B_CELL_NAIVE_67
50.1
B_CELL_NAIVE_68
50.1
B_CELL_NAIVE_69
49.8
B_CELL_NAIVE_70
49.2
B_CELL_NAIVE_71
49.1
B_CELL_NAIVE_72
49.1
B_CELL_NAIVE_73
49.0
B_CELL_NAIVE_74
48.9
B_CELL_NAIVE_75
48.8
B_CELL_NAIVE_76
48.7
B_CELL_NAIVE_77
48.0
B_CELL_NAIVE_78
47.2
B_CELL_NAIVE_79
47.2
B_CELL_NAIVE_80
46.3
B_CELL_NAIVE_81
45.9
B_CELL_NAIVE_82
45.7
B_CELL_NAIVE_83
45.4
B_CELL_NAIVE_84
44.5
B_CELL_NAIVE_85
44.0
B_CELL_NAIVE_86
43.6
B_CELL_NAIVE_87
40.6
B_CELL_NAIVE_88
40.0
B_CELL_NAIVE_89
39.6
B_CELL_NAIVE_90
38.3
B_CELL_NAIVE_91
35.6
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