A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
26.3
nTPM
Monaco:
75.2
nTPM
Schmiedel:
32.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.3
HPA sample
nTPM
NK-cell nTPM: 26.3
Samples: 6
Max nTPM: 40.7
Min nTPM: 15.5
P10809_1013
15.5
P10809_1033
32.3
P10809_1052
18.2
P10809_1071
31.1
P10809_1093
40.7
P10809_1103
19.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.2
Monaco sample
nTPM
NK-cell nTPM: 75.2
Samples: 4
Max nTPM: 98.5
Min nTPM: 40.8
RHH5316_R3683
65.2
RHH5224_R3596
96.4
RHH5253_R3625
40.8
RHH5282_R3654
98.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.7
Schmiedel sample id
TPM
NK-cell TPM: 32.7
Samples: 90
Max TPM: 53.1
Min TPM: 17.2
NK_1
53.1
NK_2
48.6
NK_3
48.5
NK_4
48.2
NK_5
47.5
NK_6
45.0
NK_7
44.1
NK_8
44.0
NK_9
42.9
NK_10
42.5
NK_11
41.2
NK_12
40.7
NK_13
39.6
NK_14
39.5
NK_15
39.3
NK_16
39.1
NK_17
38.4
NK_18
38.3
NK_19
38.2
NK_20
38.1
NK_21
38.1
NK_22
37.9
NK_23
37.7
NK_24
37.6
NK_25
37.4
NK_26
37.4
NK_27
37.2
NK_28
37.2
NK_29
36.6
NK_30
36.2
NK_31
36.1
NK_32
36.1
NK_33
35.8
NK_34
35.6
NK_35
35.6
NK_36
35.4
NK_37
35.1
NK_38
34.9
NK_39
34.8
NK_40
34.2
NK_41
34.1
NK_42
34.0
NK_43
33.0
NK_44
32.9
NK_45
32.7
NK_46
32.6
NK_47
32.5
NK_48
32.4
NK_49
31.7
NK_50
31.6
NK_51
31.0
NK_52
30.9
NK_53
30.5
NK_54
30.4
NK_55
30.3
NK_56
29.9
NK_57
29.7
NK_58
29.6
NK_59
29.5
NK_60
29.2
NK_61
29.1
NK_62
28.4
NK_63
28.3
NK_64
28.1
NK_65
27.6
NK_66
27.4
NK_67
27.1
NK_68
27.0
NK_69
26.7
NK_70
26.6
NK_71
26.5
NK_72
26.5
NK_73
26.5
NK_74
25.6
NK_75
25.5
NK_76
24.4
NK_77
23.9
NK_78
23.6
NK_79
23.2
NK_80
23.2
NK_81
22.5
NK_82
22.4
NK_83
21.7
NK_84
21.5
NK_85
21.3
NK_86
21.2
NK_87
20.6
NK_88
20.3
NK_89
20.0
NK_90
17.2
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