A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.3
nTPM
Monaco:
28.4
nTPM
Schmiedel:
11.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.3
HPA sample
nTPM
Classical monocyte nTPM: 12.5
Samples: 6
Max nTPM: 17.6
Min nTPM: 7.4
P10809_1003
7.4
P10809_1020
10.3
P10809_1039
17.6
P10809_1058
11.6
P10809_1080
15.4
P10809_1107
12.4
Intermediate monocyte nTPM: 16.3
Samples: 6
Max nTPM: 27.9
Min nTPM: 8.0
P10809_1004
8.0
P10809_1023
12.1
P10809_1042
24.1
P10809_1061
27.9
P10809_1081
14.6
P10809_1108
11.2
Non-classical monocyte nTPM: 13.4
Samples: 5
Max nTPM: 18.1
Min nTPM: 7.8
P10809_1005
7.8
P10809_1053
16.8
P10809_1072
11.1
P10809_1082
18.1
P10809_1109
13.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.4
Monaco sample
nTPM
Classical monocyte nTPM: 24.8
Samples: 4
Max nTPM: 31.4
Min nTPM: 19.1
RHH5313_R3680
28.7
RHH5221_R3593
19.1
RHH5250_R3622
20.1
RHH5279_R3651
31.4
Intermediate monocyte nTPM: 21.8
Samples: 4
Max nTPM: 31.5
Min nTPM: 13.9
RHH5314_R3681
24.2
RHH5222_R3594
17.6
RHH5251_R3623
13.9
RHH5280_R3652
31.5
Non-classical monocyte nTPM: 28.4
Samples: 4
Max nTPM: 40.0
Min nTPM: 18.0
RHH5315_R3682
40.0
RHH5223_R3595
25.2
RHH5252_R3624
18.0
RHH5281_R3653
30.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.8
Schmiedel sample id
TPM
Classical monocyte TPM: 11.8
Samples: 91
Max TPM: 24.3
Min TPM: 6.9
MONOCYTES_1
24.3
MONOCYTES_2
15.7
MONOCYTES_3
15.0
MONOCYTES_4
14.9
MONOCYTES_5
14.6
MONOCYTES_6
14.6
MONOCYTES_7
14.5
MONOCYTES_8
14.1
MONOCYTES_9
14.0
MONOCYTES_10
14.0
MONOCYTES_11
13.8
MONOCYTES_12
13.5
MONOCYTES_13
13.4
MONOCYTES_14
13.4
MONOCYTES_15
13.3
MONOCYTES_16
13.1
MONOCYTES_17
13.0
MONOCYTES_18
12.9
MONOCYTES_19
12.8
MONOCYTES_20
12.8
MONOCYTES_21
12.7
MONOCYTES_22
12.7
MONOCYTES_23
12.5
MONOCYTES_24
12.5
MONOCYTES_25
12.3
MONOCYTES_26
12.3
MONOCYTES_27
12.3
MONOCYTES_28
12.2
MONOCYTES_29
12.2
MONOCYTES_30
12.2
MONOCYTES_31
12.2
MONOCYTES_32
12.1
MONOCYTES_33
12.0
MONOCYTES_34
12.0
MONOCYTES_35
12.0
MONOCYTES_36
11.9
MONOCYTES_37
11.9
MONOCYTES_38
11.9
MONOCYTES_39
11.9
MONOCYTES_40
11.8
MONOCYTES_41
11.8
MONOCYTES_42
11.7
MONOCYTES_43
11.7
MONOCYTES_44
11.7
MONOCYTES_45
11.7
MONOCYTES_46
11.7
MONOCYTES_47
11.7
MONOCYTES_48
11.6
MONOCYTES_49
11.6
MONOCYTES_50
11.6
MONOCYTES_51
11.5
MONOCYTES_52
11.5
MONOCYTES_53
11.4
MONOCYTES_54
11.4
MONOCYTES_55
11.4
MONOCYTES_56
11.4
MONOCYTES_57
11.3
MONOCYTES_58
11.3
MONOCYTES_59
11.2
MONOCYTES_60
11.2
MONOCYTES_61
11.1
MONOCYTES_62
11.1
MONOCYTES_63
11.0
MONOCYTES_64
10.9
MONOCYTES_65
10.8
MONOCYTES_66
10.8
MONOCYTES_67
10.7
MONOCYTES_68
10.7
MONOCYTES_69
10.6
MONOCYTES_70
10.6
MONOCYTES_71
10.6
MONOCYTES_72
10.6
MONOCYTES_73
10.5
MONOCYTES_74
10.4
MONOCYTES_75
10.4
MONOCYTES_76
10.3
MONOCYTES_77
10.1
MONOCYTES_78
10.0
MONOCYTES_79
10.0
MONOCYTES_80
9.9
MONOCYTES_81
9.9
MONOCYTES_82
9.8
MONOCYTES_83
9.7
MONOCYTES_84
9.7
MONOCYTES_85
9.3
MONOCYTES_86
9.2
MONOCYTES_87
9.1
MONOCYTES_88
9.0
MONOCYTES_89
8.8
MONOCYTES_90
8.0
MONOCYTES_91
6.9
Show allShow less
Non-classical monocyte TPM: 10.7
Samples: 90
Max TPM: 22.9
Min TPM: 6.2
M2_1
22.9
M2_2
16.3
M2_3
14.1
M2_4
14.1
M2_5
13.7
M2_6
13.7
M2_7
13.4
M2_8
13.0
M2_9
13.0
M2_10
12.8
M2_11
12.8
M2_12
12.8
M2_13
12.7
M2_14
12.6
M2_15
12.4
M2_16
12.4
M2_17
12.3
M2_18
12.2
M2_19
12.1
M2_20
11.9
M2_21
11.8
M2_22
11.8
M2_23
11.8
M2_24
11.8
M2_25
11.5
M2_26
11.4
M2_27
11.4
M2_28
11.4
M2_29
11.3
M2_30
11.3
M2_31
11.3
M2_32
11.2
M2_33
11.1
M2_34
11.1
M2_35
11.0
M2_36
11.0
M2_37
10.9
M2_38
10.8
M2_39
10.8
M2_40
10.7
M2_41
10.6
M2_42
10.5
M2_43
10.4
M2_44
10.4
M2_45
10.4
M2_46
10.3
M2_47
10.3
M2_48
10.3
M2_49
10.2
M2_50
10.2
M2_51
10.1
M2_52
9.9
M2_53
9.9
M2_54
9.9
M2_55
9.8
M2_56
9.7
M2_57
9.7
M2_58
9.7
M2_59
9.7
M2_60
9.6
M2_61
9.6
M2_62
9.6
M2_63
9.5
M2_64
9.5
M2_65
9.4
M2_66
9.4
M2_67
9.3
M2_68
9.3
M2_69
9.3
M2_70
9.2
M2_71
9.2
M2_72
9.2
M2_73
9.2
M2_74
9.0
M2_75
8.9
M2_76
8.8
M2_77
8.7
M2_78
8.7
M2_79
8.6
M2_80
8.6
M2_81
8.5
M2_82
8.5
M2_83
8.4
M2_84
8.3
M2_85
8.2
M2_86
8.2
M2_87
8.0
M2_88
7.5
M2_89
7.2
M2_90
6.2
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
