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BETA
  • SUMMARY

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  • RAC2
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:759.4 nTPM
Monaco:1408.5 nTPM
Schmiedel:258.2 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

759.4
HPA sample nTPM
Memory B-cell
nTPM: 759.4
Samples: 6

Max nTPM: 913.0
Min nTPM: 570.7
P10809_1017 762.7
P10809_1025 913.0
P10809_1044 570.7
P10809_1063 720.9
P10809_1092 873.0
P10809_1105 716.1
Naive B-cell
nTPM: 671.6
Samples: 6

Max nTPM: 1227.6
Min nTPM: 466.9
P10809_1011 494.3
P10809_1029 634.4
P10809_1048 1227.6
P10809_1067 466.9
P10809_1091 641.9
P10809_1104 564.7

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1408.5
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 990.1
Samples: 4

Max nTPM: 1446.7
Min nTPM: 630.7
RHH5310_R3677 1446.7
RHH5218_R3590 961.6
RHH5247_R3619 921.4
RHH5276_R3648 630.7
Naive B-cell
nTPM: 821.7
Samples: 4

Max nTPM: 992.8
Min nTPM: 478.2
RHH5308_R3675 992.8
RHH5216_R3588 980.1
RHH5245_R3617 478.2
RHH5274_R3646 835.8
Non-switched memory B-cell
nTPM: 1160.8
Samples: 4

Max nTPM: 1369.3
Min nTPM: 782.5
RHH5309_R3676 1369.3
RHH5217_R3589 1315.9
RHH5246_R3618 1175.3
RHH5275_R3647 782.5
Plasmablast
nTPM: 1408.5
Samples: 4

Max nTPM: 1633.4
Min nTPM: 1040.7
RHH5312_R3679 1498.0
RHH5220_R3592 1633.4
RHH5249_R3621 1461.8
RHH5278_R3650 1040.7
Switched memory B-cell
nTPM: 1229.4
Samples: 4

Max nTPM: 1496.6
Min nTPM: 856.1
RHH5311_R3678 1496.6
RHH5219_R3591 1287.5
RHH5248_R3620 1277.2
RHH5277_R3649 856.1

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

258.2
Schmiedel sample id TPM
Naive B-cell
TPM: 258.2
Samples: 91

Max TPM: 423.8
Min TPM: 123.0
B_CELL_NAIVE_1 423.8
B_CELL_NAIVE_2 416.4
B_CELL_NAIVE_3 397.6
B_CELL_NAIVE_4 388.2
B_CELL_NAIVE_5 377.5
B_CELL_NAIVE_6 375.3
B_CELL_NAIVE_7 375.0
B_CELL_NAIVE_8 355.1
B_CELL_NAIVE_9 354.6
B_CELL_NAIVE_10 349.0
B_CELL_NAIVE_11 347.7
B_CELL_NAIVE_12 343.1
B_CELL_NAIVE_13 340.5
B_CELL_NAIVE_14 334.8
B_CELL_NAIVE_15 329.7
B_CELL_NAIVE_16 329.4
B_CELL_NAIVE_17 322.6
B_CELL_NAIVE_18 321.6
B_CELL_NAIVE_19 317.8
B_CELL_NAIVE_20 316.0
B_CELL_NAIVE_21 314.0
B_CELL_NAIVE_22 305.5
B_CELL_NAIVE_23 303.0
B_CELL_NAIVE_24 299.7
B_CELL_NAIVE_25 292.3
B_CELL_NAIVE_26 291.5
B_CELL_NAIVE_27 290.2
B_CELL_NAIVE_28 290.2
B_CELL_NAIVE_29 285.5
B_CELL_NAIVE_30 281.7
B_CELL_NAIVE_31 280.7
B_CELL_NAIVE_32 275.6
B_CELL_NAIVE_33 275.2
B_CELL_NAIVE_34 273.5
B_CELL_NAIVE_35 273.4
B_CELL_NAIVE_36 273.2
B_CELL_NAIVE_37 273.2
B_CELL_NAIVE_38 273.2
B_CELL_NAIVE_39 273.1
B_CELL_NAIVE_40 270.8
B_CELL_NAIVE_41 263.1
B_CELL_NAIVE_42 261.5
B_CELL_NAIVE_43 260.1
B_CELL_NAIVE_44 259.2
B_CELL_NAIVE_45 257.0
B_CELL_NAIVE_46 254.9
B_CELL_NAIVE_47 251.7
B_CELL_NAIVE_48 251.7
B_CELL_NAIVE_49 250.8
B_CELL_NAIVE_50 249.9
B_CELL_NAIVE_51 249.5
B_CELL_NAIVE_52 248.1
B_CELL_NAIVE_53 247.0
B_CELL_NAIVE_54 246.6
B_CELL_NAIVE_55 245.5
B_CELL_NAIVE_56 243.6
B_CELL_NAIVE_57 240.4
B_CELL_NAIVE_58 237.5
B_CELL_NAIVE_59 230.7
B_CELL_NAIVE_60 229.4
B_CELL_NAIVE_61 222.0
B_CELL_NAIVE_62 219.7
B_CELL_NAIVE_63 209.3
B_CELL_NAIVE_64 208.0
B_CELL_NAIVE_65 207.4
B_CELL_NAIVE_66 200.8
B_CELL_NAIVE_67 199.7
B_CELL_NAIVE_68 197.1
B_CELL_NAIVE_69 197.1
B_CELL_NAIVE_70 197.1
B_CELL_NAIVE_71 191.9
B_CELL_NAIVE_72 191.6
B_CELL_NAIVE_73 190.4
B_CELL_NAIVE_74 189.7
B_CELL_NAIVE_75 189.4
B_CELL_NAIVE_76 185.7
B_CELL_NAIVE_77 185.3
B_CELL_NAIVE_78 184.8
B_CELL_NAIVE_79 184.7
B_CELL_NAIVE_80 183.4
B_CELL_NAIVE_81 181.1
B_CELL_NAIVE_82 178.7
B_CELL_NAIVE_83 178.7
B_CELL_NAIVE_84 168.0
B_CELL_NAIVE_85 164.4
B_CELL_NAIVE_86 161.3
B_CELL_NAIVE_87 161.1
B_CELL_NAIVE_88 154.6
B_CELL_NAIVE_89 153.0
B_CELL_NAIVE_90 148.9
B_CELL_NAIVE_91 123.0
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