A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
875.9
nTPM
Monaco:
1026.2
nTPM
Schmiedel:
689.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
875.9
HPA sample
nTPM
Classical monocyte nTPM: 516.0
Samples: 6
Max nTPM: 843.4
Min nTPM: 378.2
P10809_1003
843.4
P10809_1020
507.5
P10809_1039
461.0
P10809_1058
378.2
P10809_1080
445.8
P10809_1107
459.9
Intermediate monocyte nTPM: 691.7
Samples: 6
Max nTPM: 901.5
Min nTPM: 464.4
P10809_1004
659.1
P10809_1023
775.5
P10809_1042
901.5
P10809_1061
671.9
P10809_1081
464.4
P10809_1108
677.9
Non-classical monocyte nTPM: 875.9
Samples: 5
Max nTPM: 970.1
Min nTPM: 619.2
P10809_1005
970.1
P10809_1053
954.0
P10809_1072
965.1
P10809_1082
619.2
P10809_1109
871.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1026.2
Monaco sample
nTPM
Classical monocyte nTPM: 836.2
Samples: 4
Max nTPM: 946.8
Min nTPM: 656.7
RHH5313_R3680
945.0
RHH5221_R3593
656.7
RHH5250_R3622
946.8
RHH5279_R3651
796.1
Intermediate monocyte nTPM: 1026.2
Samples: 4
Max nTPM: 1208.3
Min nTPM: 654.8
RHH5314_R3681
1208.3
RHH5222_R3594
654.8
RHH5251_R3623
1066.3
RHH5280_R3652
1175.3
Non-classical monocyte nTPM: 992.3
Samples: 4
Max nTPM: 1241.0
Min nTPM: 579.9
RHH5315_R3682
1146.8
RHH5223_R3595
579.9
RHH5252_R3624
1001.5
RHH5281_R3653
1241.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
689.3
Schmiedel sample id
TPM
Classical monocyte TPM: 396.9
Samples: 91
Max TPM: 525.4
Min TPM: 242.2
MONOCYTES_1
525.4
MONOCYTES_2
519.9
MONOCYTES_3
515.2
MONOCYTES_4
512.1
MONOCYTES_5
507.9
MONOCYTES_6
503.6
MONOCYTES_7
503.5
MONOCYTES_8
500.1
MONOCYTES_9
489.3
MONOCYTES_10
489.0
MONOCYTES_11
487.1
MONOCYTES_12
487.1
MONOCYTES_13
486.0
MONOCYTES_14
481.4
MONOCYTES_15
477.2
MONOCYTES_16
470.1
MONOCYTES_17
461.5
MONOCYTES_18
457.4
MONOCYTES_19
456.2
MONOCYTES_20
453.7
MONOCYTES_21
452.6
MONOCYTES_22
447.5
MONOCYTES_23
443.4
MONOCYTES_24
442.0
MONOCYTES_25
439.4
MONOCYTES_26
439.1
MONOCYTES_27
434.4
MONOCYTES_28
429.5
MONOCYTES_29
429.2
MONOCYTES_30
428.9
MONOCYTES_31
426.9
MONOCYTES_32
425.0
MONOCYTES_33
424.8
MONOCYTES_34
422.7
MONOCYTES_35
412.0
MONOCYTES_36
411.7
MONOCYTES_37
408.3
MONOCYTES_38
408.3
MONOCYTES_39
405.1
MONOCYTES_40
400.9
MONOCYTES_41
398.6
MONOCYTES_42
397.3
MONOCYTES_43
395.2
MONOCYTES_44
394.9
MONOCYTES_45
394.4
MONOCYTES_46
393.7
MONOCYTES_47
392.5
MONOCYTES_48
389.1
MONOCYTES_49
381.3
MONOCYTES_50
377.8
MONOCYTES_51
377.7
MONOCYTES_52
377.1
MONOCYTES_53
375.5
MONOCYTES_54
374.1
MONOCYTES_55
372.8
MONOCYTES_56
372.5
MONOCYTES_57
372.0
MONOCYTES_58
369.7
MONOCYTES_59
369.7
MONOCYTES_60
369.4
MONOCYTES_61
367.2
MONOCYTES_62
366.3
MONOCYTES_63
363.5
MONOCYTES_64
362.3
MONOCYTES_65
362.1
MONOCYTES_66
361.1
MONOCYTES_67
360.6
MONOCYTES_68
354.5
MONOCYTES_69
347.0
MONOCYTES_70
343.7
MONOCYTES_71
340.4
MONOCYTES_72
340.2
MONOCYTES_73
339.5
MONOCYTES_74
337.2
MONOCYTES_75
337.2
MONOCYTES_76
336.8
MONOCYTES_77
331.6
MONOCYTES_78
330.4
MONOCYTES_79
325.5
MONOCYTES_80
322.5
MONOCYTES_81
319.3
MONOCYTES_82
312.9
MONOCYTES_83
309.9
MONOCYTES_84
305.6
MONOCYTES_85
303.5
MONOCYTES_86
301.6
MONOCYTES_87
301.3
MONOCYTES_88
292.3
MONOCYTES_89
281.5
MONOCYTES_90
256.4
MONOCYTES_91
242.2
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Non-classical monocyte TPM: 689.3
Samples: 90
Max TPM: 1038.9
Min TPM: 382.9
M2_1
1038.9
M2_2
1019.2
M2_3
1007.0
M2_4
1004.1
M2_5
954.0
M2_6
951.7
M2_7
938.7
M2_8
931.2
M2_9
905.6
M2_10
887.5
M2_11
873.7
M2_12
871.4
M2_13
869.4
M2_14
855.3
M2_15
846.3
M2_16
840.7
M2_17
823.0
M2_18
820.4
M2_19
817.0
M2_20
805.5
M2_21
801.6
M2_22
799.2
M2_23
798.0
M2_24
797.3
M2_25
788.5
M2_26
788.1
M2_27
775.4
M2_28
765.4
M2_29
765.4
M2_30
763.5
M2_31
759.2
M2_32
757.7
M2_33
742.5
M2_34
739.1
M2_35
726.6
M2_36
721.7
M2_37
719.0
M2_38
716.3
M2_39
714.0
M2_40
710.5
M2_41
706.7
M2_42
705.6
M2_43
701.9
M2_44
699.2
M2_45
690.3
M2_46
684.1
M2_47
677.0
M2_48
670.1
M2_49
665.4
M2_50
665.0
M2_51
653.8
M2_52
653.6
M2_53
639.3
M2_54
637.4
M2_55
635.5
M2_56
629.5
M2_57
628.9
M2_58
623.9
M2_59
619.0
M2_60
617.6
M2_61
617.5
M2_62
606.6
M2_63
603.3
M2_64
596.2
M2_65
594.9
M2_66
587.6
M2_67
572.7
M2_68
571.4
M2_69
563.7
M2_70
555.9
M2_71
553.9
M2_72
550.7
M2_73
549.2
M2_74
548.2
M2_75
530.0
M2_76
520.7
M2_77
508.3
M2_78
500.7
M2_79
500.1
M2_80
493.5
M2_81
486.0
M2_82
484.2
M2_83
475.1
M2_84
465.4
M2_85
459.0
M2_86
448.4
M2_87
441.5
M2_88
433.4
M2_89
424.4
M2_90
382.9
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