A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
967.6
nTPM
Monaco:
1439.5
nTPM
Schmiedel:
1091.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
967.6
HPA sample
nTPM
NK-cell nTPM: 967.7
Samples: 6
Max nTPM: 1180.8
Min nTPM: 776.7
P10809_1013
776.7
P10809_1033
1180.8
P10809_1052
1037.7
P10809_1071
933.6
P10809_1093
796.6
P10809_1103
1080.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1439.5
Monaco sample
nTPM
NK-cell nTPM: 1439.5
Samples: 4
Max nTPM: 1908.6
Min nTPM: 825.2
RHH5316_R3683
1761.7
RHH5224_R3596
1908.6
RHH5253_R3625
825.2
RHH5282_R3654
1262.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1091.3
Schmiedel sample id
TPM
NK-cell TPM: 1091.3
Samples: 90
Max TPM: 1778.4
Min TPM: 557.2
NK_1
1778.4
NK_2
1635.4
NK_3
1586.4
NK_4
1585.0
NK_5
1583.5
NK_6
1533.5
NK_7
1529.1
NK_8
1512.8
NK_9
1474.6
NK_10
1451.8
NK_11
1397.9
NK_12
1383.5
NK_13
1356.9
NK_14
1344.1
NK_15
1342.0
NK_16
1331.0
NK_17
1325.6
NK_18
1313.3
NK_19
1303.4
NK_20
1298.0
NK_21
1283.8
NK_22
1280.9
NK_23
1270.0
NK_24
1267.8
NK_25
1267.0
NK_26
1259.3
NK_27
1241.5
NK_28
1231.7
NK_29
1226.5
NK_30
1221.4
NK_31
1220.8
NK_32
1219.4
NK_33
1216.7
NK_34
1214.7
NK_35
1213.3
NK_36
1208.0
NK_37
1187.4
NK_38
1162.2
NK_39
1139.8
NK_40
1135.6
NK_41
1129.1
NK_42
1098.6
NK_43
1097.6
NK_44
1096.9
NK_45
1083.4
NK_46
1075.1
NK_47
1075.0
NK_48
1054.6
NK_49
1051.8
NK_50
1036.6
NK_51
1036.2
NK_52
1034.6
NK_53
1022.9
NK_54
1012.7
NK_55
1012.6
NK_56
1001.3
NK_57
996.9
NK_58
980.1
NK_59
974.0
NK_60
973.4
NK_61
955.7
NK_62
954.6
NK_63
922.5
NK_64
918.9
NK_65
912.4
NK_66
908.2
NK_67
905.4
NK_68
880.2
NK_69
868.2
NK_70
860.4
NK_71
857.3
NK_72
843.0
NK_73
831.5
NK_74
831.4
NK_75
826.8
NK_76
810.2
NK_77
779.0
NK_78
776.6
NK_79
748.7
NK_80
739.0
NK_81
736.0
NK_82
735.6
NK_83
720.4
NK_84
718.2
NK_85
700.1
NK_86
671.6
NK_87
630.8
NK_88
627.2
NK_89
615.7
NK_90
557.2
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