MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.1 nTPM
HPA Brain:58.2 nTPM
GTEx:3.1 nTPM
FANTOM5:182.5 Scaled Tags Per Million
Pig:35.7 nTPM
Mouse:17.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 58.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.9
2411 Female, age 72, unknown 63.1
1870 Female, age 42, unknown 57.9
1830 Male, age 51, unknown 57.3
1833 Male, age 53, unknown 56.7
2019 Male, age 18, unknown 56.2
2219 Male, age 76, both hemispheres 55.5
1827 Male, age 72, unknown 53.2
2828 Female, age 72, unknown 52.0
2666 Male, age 74, left hemisphere 49.1
2586 Male, age 75, left hemisphere 28.0
Dorsal raphe nucleus
nTPM: 53.8
2750 Male, age 76, both hemispheres 63.9
2016 Female, age 72, unknown 55.5
2047 Male, age 72, unknown 53.1
2298 Female, age 72, unknown 48.4
1828 Male, age 53, unknown 48.3
Inferior colliculus
nTPM: 50.9
2097 Female, age 72, unknown 54.3
1890 Male, age 53, unknown 52.8
1848 Female, age 42, unknown 49.8
2849 Male, age 72, unknown 46.7
Median raphe nucleus
nTPM: 57.0
2220 Male, age 76, midline 57.0
Periaquaductal grey, anterior
nTPM: 46.5
1947 Male, age 18, unknown 51.2
1795 Male, age 51, unknown 45.5
2502 Female, age 75, unknown 42.9
Periaquaductal grey, dorsal
nTPM: 51.6
2464 Female, age 72, unknown 56.0
1831 Male, age 72, unknown 51.5
2850 Male, age 76, both hemispheres 50.8
1840 Male, age 53, unknown 48.1
Periaquaductal grey, lateral
nTPM: 49.0
2272 Male, age 74, both hemispheres 51.1
2053 Male, age 18, unknown 48.5
2140 Male, age 76, both hemispheres 47.3
Pretectal area
nTPM: 51.6
1815 Male, age 53, unknown 56.3
2273 Male, age 74, both hemispheres 55.2
2316 Male, age 76, right hemisphere 53.5
1817 Female, age 42, unknown 53.4
2007 Male, age 72, unknown 53.4
1944 Female, age 72, unknown 51.0
2667 Female, age 75, unknown 50.5
2224 Female, age 72, unknown 49.1
1816 Male, age 51, unknown 48.9
2407 Male, age 75, both hemispheres 48.9
2825 Male, age 18, unknown 46.9
Red nucleus
nTPM: 58.2
2503 Female, age 72, unknown 65.4
2823 Male, age 76, right hemisphere 64.9
1865 Male, age 51, unknown 63.9
1821 Female, age 72, unknown 63.7
1954 Female, age 42, unknown 62.4
1904 Male, age 53, unknown 60.7
2785 Male, age 18, unknown 57.0
2227 Male, age 72, unknown 56.3
2769 Male, age 72, unknown 56.1
2588 Male, age 74, left hemisphere 53.8
2725 Female, age 75, unknown 52.7
2584 Male, age 75, left hemisphere 42.1
Substantia nigra
nTPM: 55.1
2409 Female, age 72, unknown 61.4
2590 Female, age 75, unknown 60.3
2583 Male, age 75, right hemisphere 58.8
2241 Male, age 72, unknown 56.7
1941 Male, age 53, unknown 54.5
1889 Female, age 72, unknown 54.2
2699 Male, age 18, unknown 52.7
1851 Male, age 51, unknown 52.3
2665 Male, age 74, both hemispheres 50.4
1916 Female, age 42, unknown 50.1
Superior colliculus
nTPM: 50.8
1913 Female, age 42, unknown 61.1
2668 Female, age 75, unknown 55.5
2587 Male, age 74, left hemisphere 55.1
1895 Male, age 76, right hemisphere 54.5
1995 Male, age 72, unknown 53.4
2261 Male, age 18, unknown 49.3
1839 Male, age 51, unknown 49.1
2087 Female, age 72, unknown 49.0
1796 Male, age 53, unknown 47.0
2664 Male, age 75, both hemispheres 34.0
Ventral tegmental area
nTPM: 53.9
2410 Female, age 72, unknown 61.2
2223 Female, age 72, unknown 55.0
2021 Male, age 53, unknown 52.8
2218 Male, age 76, both hemispheres 52.8
1942 Male, age 51, unknown 51.0
1915 Female, age 42, unknown 50.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.1
Samples: 183

Max nTPM: 7.5
Min nTPM: 0.8
Std nTPM: 1.0
Median nTPM: 3.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 7.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 7.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 6.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 6.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 5.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 5.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 5.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 5.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 5.1
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 5.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 5.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 182.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 182.5
FF:10158-103A5 76 years, female 182.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.2
Samples: 4

Max nTPM: 33.9
Min nTPM: 30.7
Sample A Female 33.9
Sample B Female 30.7
Sample C Male 32.1
Sample D Male 32.0
Midbrain
nTPM: 35.8
Samples: 4

Max nTPM: 38.5
Min nTPM: 31.1
Sample A Female 37.8
Sample B Female 35.6
Sample C Male 38.5
Sample D Male 31.1
Periaqueductal gray
nTPM: 29.3
Samples: 3

Max nTPM: 31.7
Min nTPM: 26.9
Sample B Female 31.7
Sample C Male 26.9
Sample D Male 29.2
Superior colliculi
nTPM: 31.0
Samples: 4

Max nTPM: 36.4
Min nTPM: 27.6
Sample A Female 27.6
Sample B Female 27.9
Sample C Male 36.4
Sample D Male 32.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.7
Samples: 4

Max nTPM: 20.7
Min nTPM: 12.7
Sample A Male 12.7
Sample B Male 20.7
Sample C Female 18.6
Sample D Female 18.7

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