MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.2 nTPM
HPA Brain:52.3 nTPM
GTEx:62.2 nTPM
FANTOM5:100.8 Scaled Tags Per Million
Pig:40.3 nTPM
Mouse:151.6 nTPM
Allen mouse:3.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 52.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.2
2411 Female, age 72, unknown 46.7
1827 Male, age 72, unknown 43.2
1870 Female, age 42, unknown 41.9
2019 Male, age 18, unknown 41.8
1833 Male, age 53, unknown 40.1
2219 Male, age 76, both hemispheres 38.3
2586 Male, age 75, left hemisphere 35.7
1830 Male, age 51, unknown 35.1
2828 Female, age 72, unknown 35.1
2666 Male, age 74, left hemisphere 33.8
Dorsal raphe nucleus
nTPM: 46.0
2298 Female, age 72, unknown 61.5
2047 Male, age 72, unknown 47.0
2750 Male, age 76, both hemispheres 45.3
1828 Male, age 53, unknown 39.6
2016 Female, age 72, unknown 36.4
Inferior colliculus
nTPM: 42.0
2097 Female, age 72, unknown 49.3
1848 Female, age 42, unknown 42.0
1890 Male, age 53, unknown 39.3
2849 Male, age 72, unknown 37.4
Median raphe nucleus
nTPM: 48.4
2220 Male, age 76, midline 48.4
Periaquaductal grey, anterior
nTPM: 44.8
1947 Male, age 18, unknown 49.5
2502 Female, age 75, unknown 43.9
1795 Male, age 51, unknown 41.1
Periaquaductal grey, dorsal
nTPM: 39.3
1840 Male, age 53, unknown 44.1
2850 Male, age 76, both hemispheres 40.8
2464 Female, age 72, unknown 37.2
1831 Male, age 72, unknown 35.2
Periaquaductal grey, lateral
nTPM: 41.3
2272 Male, age 74, both hemispheres 47.8
2053 Male, age 18, unknown 38.1
2140 Male, age 76, both hemispheres 37.9
Pretectal area
nTPM: 44.1
1944 Female, age 72, unknown 54.5
1816 Male, age 51, unknown 51.5
2007 Male, age 72, unknown 50.2
2273 Male, age 74, both hemispheres 47.9
2224 Female, age 72, unknown 47.7
1817 Female, age 42, unknown 47.2
1815 Male, age 53, unknown 44.7
2667 Female, age 75, unknown 42.0
2825 Male, age 18, unknown 38.6
2316 Male, age 76, right hemisphere 31.4
2407 Male, age 75, both hemispheres 29.4
Red nucleus
nTPM: 35.6
1821 Female, age 72, unknown 45.6
2725 Female, age 75, unknown 43.1
1954 Female, age 42, unknown 37.9
2785 Male, age 18, unknown 37.9
1865 Male, age 51, unknown 36.3
1904 Male, age 53, unknown 35.3
2503 Female, age 72, unknown 35.0
2769 Male, age 72, unknown 32.5
2823 Male, age 76, right hemisphere 32.3
2227 Male, age 72, unknown 31.5
2584 Male, age 75, left hemisphere 30.2
2588 Male, age 74, left hemisphere 29.6
Substantia nigra
nTPM: 52.3
2241 Male, age 72, unknown 69.0
2409 Female, age 72, unknown 66.8
1916 Female, age 42, unknown 63.9
1851 Male, age 51, unknown 56.4
1941 Male, age 53, unknown 53.6
1889 Female, age 72, unknown 51.3
2699 Male, age 18, unknown 43.8
2590 Female, age 75, unknown 43.5
2665 Male, age 74, both hemispheres 38.2
2583 Male, age 75, right hemisphere 36.8
Superior colliculus
nTPM: 38.2
1796 Male, age 53, unknown 44.1
2587 Male, age 74, left hemisphere 43.1
2261 Male, age 18, unknown 41.9
2087 Female, age 72, unknown 41.4
1895 Male, age 76, right hemisphere 40.3
2668 Female, age 75, unknown 38.3
1839 Male, age 51, unknown 36.9
1913 Female, age 42, unknown 36.3
1995 Male, age 72, unknown 31.7
2664 Male, age 75, both hemispheres 27.6
Ventral tegmental area
nTPM: 46.7
2410 Female, age 72, unknown 56.3
2218 Male, age 76, both hemispheres 50.6
1915 Female, age 42, unknown 50.3
1942 Male, age 51, unknown 42.6
2223 Female, age 72, unknown 41.6
2021 Male, age 53, unknown 38.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 62.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.2
Samples: 183

Max nTPM: 112.5
Min nTPM: 28.0
Std nTPM: 15.8
Median nTPM: 59.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 112.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 108.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 102.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 100.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 99.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 99.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 97.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 97.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 96.1
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 95.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 94.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 100.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 100.8
FF:10158-103A5 76 years, female 100.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 40.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.4
Samples: 4

Max nTPM: 54.1
Min nTPM: 22.9
Sample A Female 54.1
Sample B Female 34.8
Sample C Male 41.9
Sample D Male 22.9
Midbrain
nTPM: 37.8
Samples: 4

Max nTPM: 41.2
Min nTPM: 35.0
Sample A Female 38.3
Sample B Female 35.0
Sample C Male 41.2
Sample D Male 36.7
Periaqueductal gray
nTPM: 31.0
Samples: 3

Max nTPM: 37.3
Min nTPM: 27.8
Sample B Female 27.8
Sample C Male 37.3
Sample D Male 27.8
Superior colliculi
nTPM: 40.3
Samples: 4

Max nTPM: 45.3
Min nTPM: 34.7
Sample A Female 41.9
Sample B Female 39.4
Sample C Male 45.3
Sample D Male 34.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 151.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 151.6
Samples: 4

Max nTPM: 156.2
Min nTPM: 148.4
Sample A Male 153.3
Sample B Male 148.4
Sample C Female 148.4
Sample D Female 156.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
413778 Antisense, RP_040809_01_C10, Mouse strain C57BL/6J (56 days, male) 3.2

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