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  • ATP1B2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:246.5 nTPM
HPA Brain:520.9 nTPM
GTEx:246.5 nTPM
FANTOM5:1234.8 Scaled Tags Per Million
Pig:342.9 nTPM
Mouse:234.9 nTPM
Allen mouse:16.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

520.9
Sample id Sample description nTPM
Amygdala
nTPM: 511.9
2695 Female, age 67, right hemisphere 640.1
2814 Male, age 76, right hemisphere 536.3
2514 Male, age 75, right hemisphere 511.3
2517 Female, age 94, left hemisphere 444.1
1987 Female, age 91, left hemisphere 427.8
Basal amygdala
nTPM: 472.0
2609 Male, age 75, right hemisphere 655.3
2110 Male, age 80, left hemisphere 518.3
1955 Male, age 76, both hemispheres 516.2
2243 Female, age 91, right hemisphere 511.2
2685 Female, age 94, left hemisphere 379.3
2827 Female, age 67, right hemisphere 251.8
Central amygdala
nTPM: 520.9
2239 Male, age 80, left hemisphere 584.8
2515 Male, age 75, right hemisphere 552.4
1905 Male, age 76, both hemispheres 526.4
2701 Female, age 91, right hemisphere 504.2
2826 Female, age 94, left hemisphere 436.6
Corticomedial amygdala
nTPM: 447.8
2829 Male, age 80, left hemisphere 540.3
2428 Male, age 75, right hemisphere 525.2
2242 Female, age 91, right hemisphere 479.0
2240 Male, age 76, both hemispheres 466.5
2429 Female, age 94, left hemisphere 396.9
2535 Female, age 67, right hemisphere 278.7
Lateral amygdala
nTPM: 455.0
2256 Male, age 80, left hemisphere 610.6
2516 Male, age 75, right hemisphere 507.8
1883 Male, age 76, both hemispheres 504.9
2255 Female, age 91, right hemisphere 493.3
2534 Female, age 94, left hemisphere 388.8
2830 Female, age 67, right hemisphere 224.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 246.5
Samples: 181

Max nTPM: 644.2
Min nTPM: 40.8
Std nTPM: 115.6
Median nTPM: 224.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 644.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 624.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 566.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 561.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 556.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 540.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 526.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 502.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 463.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 463.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 456.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 434.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 431.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 428.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 426.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 410.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 410.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 408.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 399.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 397.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 395.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 393.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 392.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 386.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 380.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 378.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 374.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 372.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 366.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 362.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 361.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 358.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 349.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 343.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 343.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 340.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 331.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 326.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 320.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 318.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 317.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 312.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 311.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 304.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 297.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 296.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 291.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 287.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 286.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 286.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 284.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 281.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 279.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 279.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 278.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 277.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 276.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 275.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 275.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 273.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 272.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 268.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 268.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 264.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 261.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 259.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 258.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 257.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 256.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 255.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 252.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 252.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 249.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 249.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 249.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 249.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 246.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 243.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 242.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 242.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 241.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 240.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 238.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 236.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 236.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 233.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 227.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 226.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 226.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 225.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 224.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 222.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 222.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 220.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 217.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 216.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 216.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 216.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 215.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 215.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 214.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 214.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 211.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 210.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 208.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 208.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 203.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 202.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 202.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 200.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 199.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 199.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 199.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 198.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 195.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 195.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 193.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 193.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 193.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 189.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 189.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 188.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 187.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 187.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 183.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 182.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 182.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 178.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 177.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 177.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 177.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 177.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 176.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 175.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 174.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 173.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 173.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 167.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 164.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 163.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 162.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 158.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 157.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 154.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 150.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 149.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 149.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 148.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 148.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 148.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 144.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 144.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 139.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 137.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 133.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 132.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 132.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 131.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 129.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 126.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 125.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 121.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 117.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 110.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 109.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 107.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 107.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 106.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 105.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 98.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 98.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 93.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 91.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 91.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 91.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 69.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 59.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 55.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 54.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 48.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 40.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1234.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1234.8
FF:10151-102I7 76 years, female 1234.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

342.9
Pig sample Sample description nTPM
Amygdala
nTPM: 342.9
Samples: 4

Max nTPM: 378.9
Min nTPM: 297.3
Sample A Female 378.9
Sample B Female 297.3
Sample C Male 349.0
Sample D Male 346.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

234.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 234.9
Samples: 4

Max nTPM: 266.3
Min nTPM: 197.5
Sample A Male 229.6
Sample B Male 197.5
Sample C Female 266.3
Sample D Female 246.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.5
74819255 Antisense, RP_060315_02_D07, Mouse strain C57BL/6J (56 days, male) 17.0
68744958 Antisense, RP_050210_01_A04, Mouse strain C57BL/6J (56 days, male) 16.0

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