MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:199.0 nTPM
HPA Brain:904.6 nTPM
GTEx:199.0 nTPM
FANTOM5:580.3 Scaled Tags Per Million
Pig:757.5 nTPM
Mouse:480.2 nTPM
Allen mouse:17.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 904.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 560.9
2586 Male, age 75, left hemisphere 911.2
2828 Female, age 72, unknown 692.7
1833 Male, age 53, unknown 638.3
1827 Male, age 72, unknown 577.3
2219 Male, age 76, both hemispheres 529.7
2666 Male, age 74, left hemisphere 528.3
1830 Male, age 51, unknown 509.0
1870 Female, age 42, unknown 454.6
2411 Female, age 72, unknown 449.9
2019 Male, age 18, unknown 318.1
Dorsal raphe nucleus
nTPM: 701.6
2047 Male, age 72, unknown 916.7
1828 Male, age 53, unknown 878.7
2016 Female, age 72, unknown 674.3
2298 Female, age 72, unknown 558.8
2750 Male, age 76, both hemispheres 479.2
Inferior colliculus
nTPM: 904.6
2849 Male, age 72, unknown 1034.1
1848 Female, age 42, unknown 987.0
1890 Male, age 53, unknown 815.1
2097 Female, age 72, unknown 782.0
Median raphe nucleus
nTPM: 544.6
2220 Male, age 76, midline 544.6
Periaquaductal grey, anterior
nTPM: 587.4
2502 Female, age 75, unknown 619.1
1947 Male, age 18, unknown 608.5
1795 Male, age 51, unknown 534.5
Periaquaductal grey, dorsal
nTPM: 705.2
2850 Male, age 76, both hemispheres 882.1
1840 Male, age 53, unknown 722.4
2464 Female, age 72, unknown 686.9
1831 Male, age 72, unknown 529.2
Periaquaductal grey, lateral
nTPM: 644.9
2140 Male, age 76, both hemispheres 813.9
2053 Male, age 18, unknown 683.9
2272 Male, age 74, both hemispheres 436.7
Pretectal area
nTPM: 565.6
2825 Male, age 18, unknown 751.5
1817 Female, age 42, unknown 739.2
1944 Female, age 72, unknown 649.4
1816 Male, age 51, unknown 622.8
2667 Female, age 75, unknown 620.9
2224 Female, age 72, unknown 541.3
2273 Male, age 74, both hemispheres 477.3
2316 Male, age 76, right hemisphere 475.7
1815 Male, age 53, unknown 473.7
2007 Male, age 72, unknown 453.6
2407 Male, age 75, both hemispheres 416.0
Red nucleus
nTPM: 639.2
1954 Female, age 42, unknown 796.4
2823 Male, age 76, right hemisphere 786.3
2725 Female, age 75, unknown 775.2
2503 Female, age 72, unknown 727.9
2227 Male, age 72, unknown 675.9
1821 Female, age 72, unknown 674.7
2769 Male, age 72, unknown 665.8
1865 Male, age 51, unknown 616.5
2588 Male, age 74, left hemisphere 609.8
1904 Male, age 53, unknown 575.5
2584 Male, age 75, left hemisphere 443.3
2785 Male, age 18, unknown 323.4
Substantia nigra
nTPM: 631.0
2699 Male, age 18, unknown 1088.2
1916 Female, age 42, unknown 807.6
1889 Female, age 72, unknown 644.8
1941 Male, age 53, unknown 614.8
2665 Male, age 74, both hemispheres 600.7
2241 Male, age 72, unknown 551.7
1851 Male, age 51, unknown 545.3
2409 Female, age 72, unknown 517.6
2583 Male, age 75, right hemisphere 476.2
2590 Female, age 75, unknown 462.7
Superior colliculus
nTPM: 544.2
2087 Female, age 72, unknown 657.6
2664 Male, age 75, both hemispheres 655.4
2261 Male, age 18, unknown 638.9
1839 Male, age 51, unknown 625.5
1796 Male, age 53, unknown 521.3
1895 Male, age 76, right hemisphere 511.7
1995 Male, age 72, unknown 494.3
2668 Female, age 75, unknown 480.7
2587 Male, age 74, left hemisphere 438.7
1913 Female, age 42, unknown 418.1
Ventral tegmental area
nTPM: 526.2
2218 Male, age 76, both hemispheres 630.3
2410 Female, age 72, unknown 552.8
1942 Male, age 51, unknown 526.9
1915 Female, age 42, unknown 521.2
2021 Male, age 53, unknown 470.2
2223 Female, age 72, unknown 455.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 199.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 199.0
Samples: 183

Max nTPM: 876.9
Min nTPM: 19.9
Std nTPM: 135.4
Median nTPM: 176.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 876.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 735.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 697.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 670.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 659.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 550.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 524.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 453.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 449.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 430.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 426.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 580.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 580.3
FF:10158-103A5 76 years, female 580.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 757.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 641.6
Samples: 4

Max nTPM: 877.0
Min nTPM: 395.5
Sample A Female 610.3
Sample B Female 395.5
Sample C Male 683.5
Sample D Male 877.0
Midbrain
nTPM: 683.7
Samples: 4

Max nTPM: 926.0
Min nTPM: 427.4
Sample A Female 427.4
Sample B Female 601.1
Sample C Male 926.0
Sample D Male 780.2
Periaqueductal gray
nTPM: 532.9
Samples: 3

Max nTPM: 587.2
Min nTPM: 436.5
Sample B Female 575.1
Sample C Male 587.2
Sample D Male 436.5
Superior colliculi
nTPM: 757.5
Samples: 4

Max nTPM: 1051.9
Min nTPM: 420.6
Sample A Female 1051.9
Sample B Female 420.6
Sample C Male 729.8
Sample D Male 827.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 480.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 480.2
Samples: 4

Max nTPM: 517.4
Min nTPM: 458.5
Sample A Male 458.5
Sample B Male 461.8
Sample C Female 517.4
Sample D Female 483.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.3
74819255 Antisense, RP_060315_02_D07, Mouse strain C57BL/6J (56 days, male) 17.5
68744958 Antisense, RP_050210_01_A04, Mouse strain C57BL/6J (56 days, male) 17.1

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