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  • ATP1B2
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
Brain methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:142.7 nTPM
HPA Brain:477.6 nTPM
GTEx:142.7 nTPM
FANTOM5:1473.0 Scaled Tags Per Million
Pig:407.9 nTPM
Mouse:246.6 nTPM
Allen mouse:17.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA010698
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

477.6
Sample id Sample description nTPM
Hippocampus
nTPM: 434.9
2148 Female, age 91, left hemisphere 478.4
2529 Female, age 94, left hemisphere 478.4
2621 Female, age 67, right hemisphere 454.6
1855 Male, age 76, left hemisphere 454.0
1911 Female, age 85, right hemisphere 376.2
1898 Male, age 80, left hemisphere 368.0
Dentate gyrus
nTPM: 338.8
2246 Female, age 85, both hemispheres 456.1
2528 Male, age 74, both hemispheres 430.1
2530 Female, age 94, left hemisphere 324.7
1927 Female, age 91, both hemispheres 303.2
2010 Male, age 76, both hemispheres 264.4
2531 Female, age 67, both hemispheres 254.2
Entorhinal gyrus
nTPM: 422.4
2117 Female, age 91, right hemisphere 559.4
1938 Female, age 85, left hemisphere 515.1
2686 Male, age 75, right hemisphere 476.8
1787 Male, age 76, left hemisphere 369.0
2764 Male, age 80, right hemisphere 309.2
2613 Female, age 94, left hemisphere 305.0
Hippocampus, CA1
nTPM: 359.1
2527 Male, age 74, both hemispheres 576.8
1873 Female, age 85, both hemispheres 326.6
2082 Female, age 91, right hemisphere 316.1
2749 Male, age 80, left hemisphere 306.6
2045 Male, age 76, both hemispheres 269.3
Hippocampus, CA2
nTPM: 367.4
1940 Female, age 85, left hemisphere 491.8
2249 Male, age 74, both hemispheres 465.7
2113 Female, age 91, right hemisphere 386.5
2437 Female, age 94, left hemisphere 347.5
1963 Male, age 80, left hemisphere 270.2
1892 Male, age 76, both hemispheres 242.4
Hippocampus, CA3
nTPM: 346.1
2436 Male, age 74, both hemispheres 467.5
2861 Female, age 67, both hemispheres 380.9
1891 Female, age 85, both hemispheres 346.6
2137 Male, age 80, left hemisphere 304.5
2620 Female, age 94, left hemisphere 298.0
1867 Male, age 76, both hemispheres 278.9
Parahippocampal cortex
nTPM: 477.6
2692 Male, age 74, both hemispheres 677.8
2250 Female, age 67, right hemisphere 663.8
2622 Female, age 67, right hemisphere 647.0
1933 Female, age 85, both hemispheres 523.6
2245 Female, age 91, both hemispheres 456.2
2693 Female, age 94, both hemispheres 400.7
2532 Female, age 72, left hemisphere 378.4
1850 Male, age 80, both hemispheres 366.7
1990 Female, age 91, right hemisphere 335.4
2018 Male, age 76, both hemispheres 326.2
Perirhinal gyrus
nTPM: 363.5
1794 Male, age 80, right hemisphere 401.8
1841 Female, age 85, right hemisphere 397.9
2521 Female, age 94, right hemisphere 363.8
1847 Female, age 91, left hemisphere 335.7
2848 Male, age 76, right hemisphere 318.5
Subiculum
nTPM: 419.0
2619 Male, age 74, both hemispheres 632.7
2438 Female, age 94, left hemisphere 469.0
2729 Female, age 91, right hemisphere 434.9
2042 Male, age 76, both hemispheres 332.5
1977 Female, age 85, both hemispheres 330.0
1901 Male, age 80, both hemispheres 314.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

142.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 142.7
Samples: 255

Max nTPM: 444.9
Min nTPM: 26.0
Std nTPM: 75.2
Median nTPM: 133.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 444.9
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 415.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 381.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 378.2
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 374.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 365.3
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 360.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 316.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 312.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 311.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 295.9
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 281.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 279.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 276.6
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 270.6
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 269.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 262.4
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 261.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 260.6
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 253.7
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 252.3
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 250.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 248.9
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 248.8
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 247.1
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 244.3
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 238.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 232.5
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 232.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 231.6
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 226.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 223.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 223.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 221.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 218.9
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 217.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 217.3
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 215.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 214.9
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 212.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 209.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 203.0
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 202.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 202.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 201.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 201.4
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 201.2
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 200.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 199.4
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 199.2
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 198.7
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 197.3
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 196.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 195.8
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 194.9
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 193.2
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 191.8
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 191.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 189.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 184.4
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 182.8
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 182.1
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 181.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 181.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 178.8
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 176.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 175.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 174.7
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 173.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 173.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 172.7
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 171.8
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 171.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 170.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 170.2
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 169.9
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 169.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 168.6
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 167.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 167.5
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 166.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 166.5
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 166.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 165.6
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 163.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 162.2
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 161.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 159.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 158.7
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 157.3
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 157.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 157.0
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 155.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 154.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 153.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 153.1
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 152.4
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 151.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 151.2
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 151.1
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 150.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 150.0
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 149.6
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 148.9
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 148.6
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 148.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 145.9
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 144.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 144.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 143.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 143.6
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 143.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 142.7
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 141.9
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 141.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 141.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 140.5
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 140.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 139.9
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 139.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 138.7
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 138.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 137.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 136.6
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 136.3
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 135.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 133.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 133.7
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 133.4
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 131.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 131.1
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 129.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 126.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 125.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 123.1
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 123.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 123.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 123.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 122.1
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 122.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 121.5
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 120.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 120.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 119.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 119.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 118.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 118.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 118.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 117.5
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 117.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 116.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 116.7
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 113.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 113.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 111.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 111.5
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 109.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 107.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 107.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 106.7
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 106.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 106.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 105.7
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 105.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 103.7
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 103.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 102.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 102.2
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 102.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 101.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 100.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 99.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 98.2
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 96.1
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 96.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 94.0
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 92.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 92.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 92.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 91.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 91.6
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 91.3
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 89.6
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 89.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 89.2
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 88.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 88.4
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 88.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 87.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 85.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 85.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 85.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 85.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 84.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 84.0
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 83.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 82.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 82.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 81.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 81.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 81.7
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 81.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 81.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 80.3
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 78.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 78.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 77.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 75.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 75.2
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 74.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 74.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 74.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 74.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 73.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 72.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 72.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 70.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 69.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 69.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 68.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 67.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 67.1
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 67.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 66.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 65.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 65.4
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 65.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 63.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 62.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 60.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 59.7
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 59.7
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 56.6
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 56.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 55.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 52.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 51.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 51.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 50.8
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 48.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 48.8
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 48.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 45.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 43.9
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 40.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 39.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 39.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 39.4
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 38.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 37.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 32.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 32.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 32.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 30.5
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 26.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1473.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1473.0
FF:10169-103B7 60 years, female 1734.4
FF:10153-102I9 76 years, female 1211.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

407.9
Pig sample Sample description nTPM
Subiculum
nTPM: 347.3
Samples: 4

Max nTPM: 448.3
Min nTPM: 282.6
Sample A Female 448.3
Sample B Female 282.6
Sample C Male 349.4
Sample D Male 308.8
Dorsal hippocampus
nTPM: 322.7
Samples: 4

Max nTPM: 367.5
Min nTPM: 266.9
Sample A Female 328.6
Sample B Female 266.9
Sample C Male 327.7
Sample D Male 367.5
Entorhinal cortex
nTPM: 407.9
Samples: 4

Max nTPM: 449.7
Min nTPM: 380.7
Sample A Female 449.7
Sample B Female 380.7
Sample C Male 401.1
Sample D Male 400.2
Ventral hippocampus
nTPM: 333.7
Samples: 4

Max nTPM: 458.0
Min nTPM: 248.1
Sample A Female 274.6
Sample B Female 248.1
Sample C Male 458.0
Sample D Male 354.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 246.6
Samples: 4

Max nTPM: 263.4
Min nTPM: 209.7
Sample A Male 261.9
Sample B Male 209.7
Sample C Female 251.5
Sample D Female 263.4
Hippocampal formation
nTPM: 229.6
Samples: 4

Max nTPM: 244.1
Min nTPM: 221.2
Sample A Male 221.2
Sample B Male 223.6
Sample C Female 244.1
Sample D Female 229.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.9
68744958 Antisense, RP_050210_01_A04, Mouse strain C57BL/6J (56 days, male) 18.9
74819255 Antisense, RP_060315_02_D07, Mouse strain C57BL/6J (56 days, male) 16.8

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