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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Antibody HPA010698
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
477.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 434.9
2148
Female, age 91, left hemisphere
478.4
2529
Female, age 94, left hemisphere
478.4
2621
Female, age 67, right hemisphere
454.6
1855
Male, age 76, left hemisphere
454.0
1911
Female, age 85, right hemisphere
376.2
1898
Male, age 80, left hemisphere
368.0
Dentate gyrus nTPM: 338.8
2246
Female, age 85, both hemispheres
456.1
2528
Male, age 74, both hemispheres
430.1
2530
Female, age 94, left hemisphere
324.7
1927
Female, age 91, both hemispheres
303.2
2010
Male, age 76, both hemispheres
264.4
2531
Female, age 67, both hemispheres
254.2
Entorhinal gyrus nTPM: 422.4
2117
Female, age 91, right hemisphere
559.4
1938
Female, age 85, left hemisphere
515.1
2686
Male, age 75, right hemisphere
476.8
1787
Male, age 76, left hemisphere
369.0
2764
Male, age 80, right hemisphere
309.2
2613
Female, age 94, left hemisphere
305.0
Hippocampus, CA1 nTPM: 359.1
2527
Male, age 74, both hemispheres
576.8
1873
Female, age 85, both hemispheres
326.6
2082
Female, age 91, right hemisphere
316.1
2749
Male, age 80, left hemisphere
306.6
2045
Male, age 76, both hemispheres
269.3
Hippocampus, CA2 nTPM: 367.4
1940
Female, age 85, left hemisphere
491.8
2249
Male, age 74, both hemispheres
465.7
2113
Female, age 91, right hemisphere
386.5
2437
Female, age 94, left hemisphere
347.5
1963
Male, age 80, left hemisphere
270.2
1892
Male, age 76, both hemispheres
242.4
Hippocampus, CA3 nTPM: 346.1
2436
Male, age 74, both hemispheres
467.5
2861
Female, age 67, both hemispheres
380.9
1891
Female, age 85, both hemispheres
346.6
2137
Male, age 80, left hemisphere
304.5
2620
Female, age 94, left hemisphere
298.0
1867
Male, age 76, both hemispheres
278.9
Parahippocampal cortex nTPM: 477.6
2692
Male, age 74, both hemispheres
677.8
2250
Female, age 67, right hemisphere
663.8
2622
Female, age 67, right hemisphere
647.0
1933
Female, age 85, both hemispheres
523.6
2245
Female, age 91, both hemispheres
456.2
2693
Female, age 94, both hemispheres
400.7
2532
Female, age 72, left hemisphere
378.4
1850
Male, age 80, both hemispheres
366.7
1990
Female, age 91, right hemisphere
335.4
2018
Male, age 76, both hemispheres
326.2
Perirhinal gyrus nTPM: 363.5
1794
Male, age 80, right hemisphere
401.8
1841
Female, age 85, right hemisphere
397.9
2521
Female, age 94, right hemisphere
363.8
1847
Female, age 91, left hemisphere
335.7
2848
Male, age 76, right hemisphere
318.5
Subiculum nTPM: 419.0
2619
Male, age 74, both hemispheres
632.7
2438
Female, age 94, left hemisphere
469.0
2729
Female, age 91, right hemisphere
434.9
2042
Male, age 76, both hemispheres
332.5
1977
Female, age 85, both hemispheres
330.0
1901
Male, age 80, both hemispheres
314.8
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
142.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 142.7
Samples: 255
Max nTPM: 444.9
Min nTPM: 26.0
Std nTPM: 75.2
Median nTPM: 133.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
444.9
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
415.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
381.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
378.2
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
374.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
365.3
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
360.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
316.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
312.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
311.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
295.9
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
281.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
279.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
276.6
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
270.6
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
269.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
262.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
261.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
260.6
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
253.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
252.3
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
250.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
248.9
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
248.8
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
247.1
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
244.3
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
238.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
232.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
232.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
231.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
226.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
223.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
223.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
221.2
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
218.9
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
217.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
217.3
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
215.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
214.9
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
212.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
209.6
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
203.0
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
202.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
202.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
201.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
201.4
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
201.2
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
200.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
199.4
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
199.2
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
198.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
197.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
196.7
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
195.8
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
194.9
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
193.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
191.8
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
191.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
189.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
184.4
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
182.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
182.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
181.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
181.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
178.8
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
176.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
175.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
174.7
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
173.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
173.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
172.7
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
171.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
171.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
170.7
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
170.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
169.9
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
169.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
168.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
167.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
167.5
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
166.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
166.5
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
166.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
165.6
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
163.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
162.2
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
161.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
159.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
158.7
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
157.3
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
157.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
157.0
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
155.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
154.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
153.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
153.1
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
152.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
151.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
151.2
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
151.1
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
150.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
150.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
149.6
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
148.9
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
148.6
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
148.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
145.9
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
144.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
144.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
143.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
143.6
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
143.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
142.7
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
141.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
141.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
141.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
140.5
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
140.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
139.9
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
139.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
138.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
138.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
137.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
136.6
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
136.3
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
135.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
133.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
133.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
133.4
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
131.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
131.1
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
129.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
126.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
125.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
123.1
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
123.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
123.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
123.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
122.1
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
122.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
121.5
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
120.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
120.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
119.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
119.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
118.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
118.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
118.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
117.5
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
117.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
116.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
116.7
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
113.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
113.5
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
111.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
111.5
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
109.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
107.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
107.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
106.7
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
106.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
106.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
105.7
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
105.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
103.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
103.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
102.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
102.2
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
102.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
101.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
100.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
99.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
98.2
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
96.1
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
96.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
94.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
92.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
92.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
92.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
91.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
91.6
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
91.3
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
89.6
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
89.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
89.2
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
88.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
88.4
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
88.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
87.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
85.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
85.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
85.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
85.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
84.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
84.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
83.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
82.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
82.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
81.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
81.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
81.7
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
81.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
81.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
80.3
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
78.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
78.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
77.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
75.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
75.2
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
74.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
74.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
74.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
74.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
73.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
72.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
72.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
70.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
69.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
69.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
68.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
67.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
67.1
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
67.0
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
66.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
65.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
65.4
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
65.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
63.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
62.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
60.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
59.7
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
59.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
56.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
56.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
55.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
52.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
51.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
51.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
50.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
48.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
48.8
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
48.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
45.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
43.9
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
40.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
39.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
39.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
39.4
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
38.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
37.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
32.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
32.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
32.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
30.5
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
26.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
407.9
Pig sample
Sample description
nTPM
Subiculum nTPM: 347.3
Samples: 4
Max nTPM: 448.3
Min nTPM: 282.6
Sample A
Female
448.3
Sample B
Female
282.6
Sample C
Male
349.4
Sample D
Male
308.8
Dorsal hippocampus nTPM: 322.7
Samples: 4
Max nTPM: 367.5
Min nTPM: 266.9
Sample A
Female
328.6
Sample B
Female
266.9
Sample C
Male
327.7
Sample D
Male
367.5
Entorhinal cortex nTPM: 407.9
Samples: 4
Max nTPM: 449.7
Min nTPM: 380.7
Sample A
Female
449.7
Sample B
Female
380.7
Sample C
Male
401.1
Sample D
Male
400.2
Ventral hippocampus nTPM: 333.7
Samples: 4
Max nTPM: 458.0
Min nTPM: 248.1
Sample A
Female
274.6
Sample B
Female
248.1
Sample C
Male
458.0
Sample D
Male
354.2
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
246.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 246.6
Samples: 4
Max nTPM: 263.4
Min nTPM: 209.7
Sample A
Male
261.9
Sample B
Male
209.7
Sample C
Female
251.5
Sample D
Female
263.4
Hippocampal formation nTPM: 229.6
Samples: 4
Max nTPM: 244.1
Min nTPM: 221.2
Sample A
Male
221.2
Sample B
Male
223.6
Sample C
Female
244.1
Sample D
Female
229.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.