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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • RPS4Y1
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:156.9 nTPM
Monaco:90.4 nTPM
Schmiedel:347.1 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

156.9
HPA sample nTPM
Memory B-cell
nTPM: 156.9
Samples: 6

Max nTPM: 380.1
Min nTPM: 0.4
P10809_1017 254.4
P10809_1025 380.1
P10809_1044 0.8
P10809_1063 0.4
P10809_1092 304.8
P10809_1105 0.6
Naive B-cell
nTPM: 142.5
Samples: 6

Max nTPM: 303.5
Min nTPM: 0.2
P10809_1011 257.3
P10809_1029 292.6
P10809_1048 1.1
P10809_1067 0.5
P10809_1091 303.5
P10809_1104 0.2

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

90.4
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 88.7
Samples: 4

Max nTPM: 253.9
Min nTPM: 0.0
RHH5310_R3677 0.0
RHH5218_R3590 100.7
RHH5247_R3619 253.9
RHH5276_R3648 0.3
Naive B-cell
nTPM: 90.5
Samples: 4

Max nTPM: 194.7
Min nTPM: 0.0
RHH5308_R3675 0.0
RHH5216_R3588 167.2
RHH5245_R3617 194.7
RHH5274_R3646 0.0
Non-switched memory B-cell
nTPM: 87.2
Samples: 4

Max nTPM: 191.1
Min nTPM: 0.0
RHH5309_R3676 0.0
RHH5217_R3589 157.3
RHH5246_R3618 191.1
RHH5275_R3647 0.3
Plasmablast
nTPM: 59.8
Samples: 4

Max nTPM: 144.5
Min nTPM: 0.0
RHH5312_R3679 0.0
RHH5220_R3592 94.1
RHH5249_R3621 144.5
RHH5278_R3650 0.7
Switched memory B-cell
nTPM: 84.1
Samples: 4

Max nTPM: 202.5
Min nTPM: 0.0
RHH5311_R3678 0.3
RHH5219_R3591 202.5
RHH5248_R3620 133.4
RHH5277_R3649 0.0

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

347.1
Schmiedel sample id TPM
Naive B-cell
TPM: 347.1
Samples: 91

Max TPM: 675.7
Min TPM: 0.1
B_CELL_NAIVE_1 675.7
B_CELL_NAIVE_2 666.5
B_CELL_NAIVE_3 657.6
B_CELL_NAIVE_4 645.0
B_CELL_NAIVE_5 643.3
B_CELL_NAIVE_6 640.4
B_CELL_NAIVE_7 638.1
B_CELL_NAIVE_8 637.6
B_CELL_NAIVE_9 636.8
B_CELL_NAIVE_10 633.9
B_CELL_NAIVE_11 618.7
B_CELL_NAIVE_12 609.3
B_CELL_NAIVE_13 608.9
B_CELL_NAIVE_14 605.8
B_CELL_NAIVE_15 604.6
B_CELL_NAIVE_16 603.9
B_CELL_NAIVE_17 602.0
B_CELL_NAIVE_18 601.1
B_CELL_NAIVE_19 599.8
B_CELL_NAIVE_20 597.4
B_CELL_NAIVE_21 596.4
B_CELL_NAIVE_22 595.5
B_CELL_NAIVE_23 594.8
B_CELL_NAIVE_24 589.4
B_CELL_NAIVE_25 588.7
B_CELL_NAIVE_26 583.1
B_CELL_NAIVE_27 580.1
B_CELL_NAIVE_28 577.9
B_CELL_NAIVE_29 573.7
B_CELL_NAIVE_30 573.7
B_CELL_NAIVE_31 573.4
B_CELL_NAIVE_32 572.7
B_CELL_NAIVE_33 571.1
B_CELL_NAIVE_34 568.8
B_CELL_NAIVE_35 567.6
B_CELL_NAIVE_36 566.7
B_CELL_NAIVE_37 564.2
B_CELL_NAIVE_38 561.5
B_CELL_NAIVE_39 561.5
B_CELL_NAIVE_40 556.1
B_CELL_NAIVE_41 552.3
B_CELL_NAIVE_42 551.9
B_CELL_NAIVE_43 547.3
B_CELL_NAIVE_44 547.2
B_CELL_NAIVE_45 545.2
B_CELL_NAIVE_46 543.7
B_CELL_NAIVE_47 543.0
B_CELL_NAIVE_48 540.6
B_CELL_NAIVE_49 533.9
B_CELL_NAIVE_50 531.2
B_CELL_NAIVE_51 527.3
B_CELL_NAIVE_52 524.4
B_CELL_NAIVE_53 521.0
B_CELL_NAIVE_54 509.9
B_CELL_NAIVE_55 1.9
B_CELL_NAIVE_56 1.7
B_CELL_NAIVE_57 1.5
B_CELL_NAIVE_58 1.3
B_CELL_NAIVE_59 1.1
B_CELL_NAIVE_60 1.1
B_CELL_NAIVE_61 1.1
B_CELL_NAIVE_62 1.0
B_CELL_NAIVE_63 1.0
B_CELL_NAIVE_64 0.8
B_CELL_NAIVE_65 0.7
B_CELL_NAIVE_66 0.7
B_CELL_NAIVE_67 0.7
B_CELL_NAIVE_68 0.6
B_CELL_NAIVE_69 0.6
B_CELL_NAIVE_70 0.6
B_CELL_NAIVE_71 0.5
B_CELL_NAIVE_72 0.5
B_CELL_NAIVE_73 0.5
B_CELL_NAIVE_74 0.5
B_CELL_NAIVE_75 0.5
B_CELL_NAIVE_76 0.5
B_CELL_NAIVE_77 0.4
B_CELL_NAIVE_78 0.4
B_CELL_NAIVE_79 0.4
B_CELL_NAIVE_80 0.4
B_CELL_NAIVE_81 0.3
B_CELL_NAIVE_82 0.3
B_CELL_NAIVE_83 0.3
B_CELL_NAIVE_84 0.3
B_CELL_NAIVE_85 0.3
B_CELL_NAIVE_86 0.2
B_CELL_NAIVE_87 0.2
B_CELL_NAIVE_88 0.1
B_CELL_NAIVE_89 0.1
B_CELL_NAIVE_90 0.1
B_CELL_NAIVE_91 0.1
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