A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
156.9
nTPM
Monaco:
90.4
nTPM
Schmiedel:
347.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
156.9
HPA sample
nTPM
Memory B-cell nTPM: 156.9
Samples: 6
Max nTPM: 380.1
Min nTPM: 0.4
P10809_1017
254.4
P10809_1025
380.1
P10809_1044
0.8
P10809_1063
0.4
P10809_1092
304.8
P10809_1105
0.6
Naive B-cell nTPM: 142.5
Samples: 6
Max nTPM: 303.5
Min nTPM: 0.2
P10809_1011
257.3
P10809_1029
292.6
P10809_1048
1.1
P10809_1067
0.5
P10809_1091
303.5
P10809_1104
0.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 88.7
Samples: 4
Max nTPM: 253.9
Min nTPM: 0.0
RHH5310_R3677
0.0
RHH5218_R3590
100.7
RHH5247_R3619
253.9
RHH5276_R3648
0.3
Naive B-cell nTPM: 90.5
Samples: 4
Max nTPM: 194.7
Min nTPM: 0.0
RHH5308_R3675
0.0
RHH5216_R3588
167.2
RHH5245_R3617
194.7
RHH5274_R3646
0.0
Non-switched memory B-cell nTPM: 87.2
Samples: 4
Max nTPM: 191.1
Min nTPM: 0.0
RHH5309_R3676
0.0
RHH5217_R3589
157.3
RHH5246_R3618
191.1
RHH5275_R3647
0.3
Plasmablast nTPM: 59.8
Samples: 4
Max nTPM: 144.5
Min nTPM: 0.0
RHH5312_R3679
0.0
RHH5220_R3592
94.1
RHH5249_R3621
144.5
RHH5278_R3650
0.7
Switched memory B-cell nTPM: 84.1
Samples: 4
Max nTPM: 202.5
Min nTPM: 0.0
RHH5311_R3678
0.3
RHH5219_R3591
202.5
RHH5248_R3620
133.4
RHH5277_R3649
0.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
347.1
Schmiedel sample id
TPM
Naive B-cell TPM: 347.1
Samples: 91
Max TPM: 675.7
Min TPM: 0.1
B_CELL_NAIVE_1
675.7
B_CELL_NAIVE_2
666.5
B_CELL_NAIVE_3
657.6
B_CELL_NAIVE_4
645.0
B_CELL_NAIVE_5
643.3
B_CELL_NAIVE_6
640.4
B_CELL_NAIVE_7
638.1
B_CELL_NAIVE_8
637.6
B_CELL_NAIVE_9
636.8
B_CELL_NAIVE_10
633.9
B_CELL_NAIVE_11
618.7
B_CELL_NAIVE_12
609.3
B_CELL_NAIVE_13
608.9
B_CELL_NAIVE_14
605.8
B_CELL_NAIVE_15
604.6
B_CELL_NAIVE_16
603.9
B_CELL_NAIVE_17
602.0
B_CELL_NAIVE_18
601.1
B_CELL_NAIVE_19
599.8
B_CELL_NAIVE_20
597.4
B_CELL_NAIVE_21
596.4
B_CELL_NAIVE_22
595.5
B_CELL_NAIVE_23
594.8
B_CELL_NAIVE_24
589.4
B_CELL_NAIVE_25
588.7
B_CELL_NAIVE_26
583.1
B_CELL_NAIVE_27
580.1
B_CELL_NAIVE_28
577.9
B_CELL_NAIVE_29
573.7
B_CELL_NAIVE_30
573.7
B_CELL_NAIVE_31
573.4
B_CELL_NAIVE_32
572.7
B_CELL_NAIVE_33
571.1
B_CELL_NAIVE_34
568.8
B_CELL_NAIVE_35
567.6
B_CELL_NAIVE_36
566.7
B_CELL_NAIVE_37
564.2
B_CELL_NAIVE_38
561.5
B_CELL_NAIVE_39
561.5
B_CELL_NAIVE_40
556.1
B_CELL_NAIVE_41
552.3
B_CELL_NAIVE_42
551.9
B_CELL_NAIVE_43
547.3
B_CELL_NAIVE_44
547.2
B_CELL_NAIVE_45
545.2
B_CELL_NAIVE_46
543.7
B_CELL_NAIVE_47
543.0
B_CELL_NAIVE_48
540.6
B_CELL_NAIVE_49
533.9
B_CELL_NAIVE_50
531.2
B_CELL_NAIVE_51
527.3
B_CELL_NAIVE_52
524.4
B_CELL_NAIVE_53
521.0
B_CELL_NAIVE_54
509.9
B_CELL_NAIVE_55
1.9
B_CELL_NAIVE_56
1.7
B_CELL_NAIVE_57
1.5
B_CELL_NAIVE_58
1.3
B_CELL_NAIVE_59
1.1
B_CELL_NAIVE_60
1.1
B_CELL_NAIVE_61
1.1
B_CELL_NAIVE_62
1.0
B_CELL_NAIVE_63
1.0
B_CELL_NAIVE_64
0.8
B_CELL_NAIVE_65
0.7
B_CELL_NAIVE_66
0.7
B_CELL_NAIVE_67
0.7
B_CELL_NAIVE_68
0.6
B_CELL_NAIVE_69
0.6
B_CELL_NAIVE_70
0.6
B_CELL_NAIVE_71
0.5
B_CELL_NAIVE_72
0.5
B_CELL_NAIVE_73
0.5
B_CELL_NAIVE_74
0.5
B_CELL_NAIVE_75
0.5
B_CELL_NAIVE_76
0.5
B_CELL_NAIVE_77
0.4
B_CELL_NAIVE_78
0.4
B_CELL_NAIVE_79
0.4
B_CELL_NAIVE_80
0.4
B_CELL_NAIVE_81
0.3
B_CELL_NAIVE_82
0.3
B_CELL_NAIVE_83
0.3
B_CELL_NAIVE_84
0.3
B_CELL_NAIVE_85
0.3
B_CELL_NAIVE_86
0.2
B_CELL_NAIVE_87
0.2
B_CELL_NAIVE_88
0.1
B_CELL_NAIVE_89
0.1
B_CELL_NAIVE_90
0.1
B_CELL_NAIVE_91
0.1
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