A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
125.2
nTPM
Monaco:
43.4
nTPM
Schmiedel:
265.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
125.2
HPA sample
nTPM
NK-cell nTPM: 125.2
Samples: 6
Max nTPM: 394.9
Min nTPM: 0.3
P10809_1013
232.5
P10809_1033
394.9
P10809_1052
0.9
P10809_1071
0.6
P10809_1093
122.1
P10809_1103
0.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.4
Monaco sample
nTPM
NK-cell nTPM: 43.5
Samples: 4
Max nTPM: 100.1
Min nTPM: 0.0
RHH5316_R3683
0.0
RHH5224_R3596
100.1
RHH5253_R3625
73.7
RHH5282_R3654
0.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
265.9
Schmiedel sample id
TPM
NK-cell TPM: 265.9
Samples: 90
Max TPM: 571.8
Min TPM: 0.0
NK_1
571.8
NK_2
525.0
NK_3
510.5
NK_4
502.8
NK_5
498.6
NK_6
493.5
NK_7
491.7
NK_8
491.1
NK_9
490.3
NK_10
480.1
NK_11
475.4
NK_12
471.9
NK_13
466.2
NK_14
463.8
NK_15
463.6
NK_16
459.2
NK_17
457.0
NK_18
456.9
NK_19
455.9
NK_20
455.5
NK_21
455.4
NK_22
452.7
NK_23
451.2
NK_24
450.7
NK_25
448.5
NK_26
447.5
NK_27
440.7
NK_28
439.2
NK_29
438.6
NK_30
435.9
NK_31
435.7
NK_32
430.8
NK_33
430.8
NK_34
428.0
NK_35
427.9
NK_36
425.4
NK_37
425.3
NK_38
424.2
NK_39
424.0
NK_40
423.2
NK_41
421.6
NK_42
419.0
NK_43
416.1
NK_44
412.4
NK_45
409.0
NK_46
406.5
NK_47
390.4
NK_48
388.1
NK_49
385.7
NK_50
376.5
NK_51
376.3
NK_52
369.0
NK_53
364.0
NK_54
360.2
NK_55
4.3
NK_56
1.9
NK_57
1.0
NK_58
0.9
NK_59
0.8
NK_60
0.8
NK_61
0.6
NK_62
0.6
NK_63
0.5
NK_64
0.5
NK_65
0.5
NK_66
0.5
NK_67
0.4
NK_68
0.4
NK_69
0.4
NK_70
0.4
NK_71
0.3
NK_72
0.3
NK_73
0.2
NK_74
0.2
NK_75
0.2
NK_76
0.2
NK_77
0.1
NK_78
0.1
NK_79
0.1
NK_80
0.1
NK_81
0.1
NK_82
0.1
NK_83
0.1
NK_84
0.1
NK_85
0.0
NK_86
0.0
NK_87
0.0
NK_88
0.0
NK_89
0.0
NK_90
0.0
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