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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:273.6 nTPM
HPA Brain:81.0 nTPM
GTEx:273.6 nTPM
FANTOM5:6.6 Scaled Tags Per Million
Mouse:8.8 nTPM
Allen mouse:3.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.0
Sample id Sample description nTPM
Amygdala
nTPM: 81.0
2695 Female, age 67, right hemisphere 150.3
2814 Male, age 76, right hemisphere 74.3
1987 Female, age 91, left hemisphere 73.5
2514 Male, age 75, right hemisphere 72.1
2517 Female, age 94, left hemisphere 34.7
Basal amygdala
nTPM: 47.8
1955 Male, age 76, both hemispheres 71.2
2243 Female, age 91, right hemisphere 68.9
2609 Male, age 75, right hemisphere 58.1
2110 Male, age 80, left hemisphere 44.7
2827 Female, age 67, right hemisphere 22.3
2685 Female, age 94, left hemisphere 21.4
Central amygdala
nTPM: 58.5
2701 Female, age 91, right hemisphere 115.7
1905 Male, age 76, both hemispheres 63.9
2239 Male, age 80, left hemisphere 44.9
2515 Male, age 75, right hemisphere 39.0
2826 Female, age 94, left hemisphere 28.9
Corticomedial amygdala
nTPM: 53.2
2242 Female, age 91, right hemisphere 82.3
2240 Male, age 76, both hemispheres 68.3
2428 Male, age 75, right hemisphere 58.1
2829 Male, age 80, left hemisphere 44.6
2429 Female, age 94, left hemisphere 41.4
2535 Female, age 67, right hemisphere 24.5
Lateral amygdala
nTPM: 48.4
2255 Female, age 91, right hemisphere 81.8
1883 Male, age 76, both hemispheres 72.7
2256 Male, age 80, left hemisphere 52.7
2516 Male, age 75, right hemisphere 39.3
2534 Female, age 94, left hemisphere 22.7
2830 Female, age 67, right hemisphere 21.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

273.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 273.6
Samples: 181

Max nTPM: 1740.8
Min nTPM: 40.4
Std nTPM: 196.7
Median nTPM: 225.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1740.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1058.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 909.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 790.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 765.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 717.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 709.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 616.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 614.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 603.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 558.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 545.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 540.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 522.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 514.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 507.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 466.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 465.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 463.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 456.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 444.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 444.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 442.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 439.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 435.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 433.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 424.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 419.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 407.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 403.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 394.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 391.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 389.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 388.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 387.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 380.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 379.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 376.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 375.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 363.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 361.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 353.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 352.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 352.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 352.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 338.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 337.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 330.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 328.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 327.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 325.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 324.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 322.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 320.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 318.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 313.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 308.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 307.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 306.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 301.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 300.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 284.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 282.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 278.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 275.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 273.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 271.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 265.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 265.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 262.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 259.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 258.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 257.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 256.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 247.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 247.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 243.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 242.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 242.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 238.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 238.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 238.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 234.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 234.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 233.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 232.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 231.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 229.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 228.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 228.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 225.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 224.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 218.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 215.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 215.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 215.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 211.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 210.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 207.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 207.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 204.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 204.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 201.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 199.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 197.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 195.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 194.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 193.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 191.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 190.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 189.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 189.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 187.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 186.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 184.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 184.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 184.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 183.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 179.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 178.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 177.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 177.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 174.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 173.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 173.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 172.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 171.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 170.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 167.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 166.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 163.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 163.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 161.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 161.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 160.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 160.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 160.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 159.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 159.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 158.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 155.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 153.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 151.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 150.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 148.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 146.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 145.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 142.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 138.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 137.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 133.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 128.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 127.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 123.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 121.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 121.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 120.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 120.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 116.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 115.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 113.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 113.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 112.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 111.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 102.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 100.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 98.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 97.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 88.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 84.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 83.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 83.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 81.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 61.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 57.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 56.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 56.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 45.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 44.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 41.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 40.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

6.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 6.6
FF:10151-102I7 76 years, female 6.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 8.8
Samples: 4

Max nTPM: 11.6
Min nTPM: 5.8
Sample A Male 9.4
Sample B Male 8.2
Sample C Female 5.8
Sample D Female 11.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.7
68910959 Antisense, RP_041214_01_G03, Mouse strain C57BL/6J (56 days, male) 3.7

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