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  • APOC1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:247.9 nTPM
HPA Brain:94.9 nTPM
GTEx:247.9 nTPM
FANTOM5:17.9 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 53.3
1981 Female, age 72, midline 76.1
2565 Male, age 75, midline 61.1
2048 Male, age 55, midline 54.2
2816 Male, age 47, midline 42.8
2194 Female, age 79, both hemispheres 32.5
Cervical spinal cord, dorsal horn
nTPM: 66.6
2069 Male, age 47, both hemispheres 104.8
1877 Male, age 55, unknown 92.9
2173 Female, age 72, unknown 75.8
2721 Male, age 90, both hemispheres 71.5
2296 Male, age 66, both hemispheres 27.9
2297 Male, age 75, both hemispheres 26.8
Cervical spinal cord, ventral horn
nTPM: 94.9
2098 Female, age 72, unknown 202.7
2809 Male, age 90, both hemispheres 131.9
2295 Male, age 66, both hemispheres 99.2
2480 Male, age 75, both hemispheres 62.6
2068 Male, age 55, unknown 47.0
2820 Female, age 79, both hemispheres 25.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 247.9
Samples: 204

Max nTPM: 6042.2
Min nTPM: 22.2
Std nTPM: 454.7
Median nTPM: 170.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 6042.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1258.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1218.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1195.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1119.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1048.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 954.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 766.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 694.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 604.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 572.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 551.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 544.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 497.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 466.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 457.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 448.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 432.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 422.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 396.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 394.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 390.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 370.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 360.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 354.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 350.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 350.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 338.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 334.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 332.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 330.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 329.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 326.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 325.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 321.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 318.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 317.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 307.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 305.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 303.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 299.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 298.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 297.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 297.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 294.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 285.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 279.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 278.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 276.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 276.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 276.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 265.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 265.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 257.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 254.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 252.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 249.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 247.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 242.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 239.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 238.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 237.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 235.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 234.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 234.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 229.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 228.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 225.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 225.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 225.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 223.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 222.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 213.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 213.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 209.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 206.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 204.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 200.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 197.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 196.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 196.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 195.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 192.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 191.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 190.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 188.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 185.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 181.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 181.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 181.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 177.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 176.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 176.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 176.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 176.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 175.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 173.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 172.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 172.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 171.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 171.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 170.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 170.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 169.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 168.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 167.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 167.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 166.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 165.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 164.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 161.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 160.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 153.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 152.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 151.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 150.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 150.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 147.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 147.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 147.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 146.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 146.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 143.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 142.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 141.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 139.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 138.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 136.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 136.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 135.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 135.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 134.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 131.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 128.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 126.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 126.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 124.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 124.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 123.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 121.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 117.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 115.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 114.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 112.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 112.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 110.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 108.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 106.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 100.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 98.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 98.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 98.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 98.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 95.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 94.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 94.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 93.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 92.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 92.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 92.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 89.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 87.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 86.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 86.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 86.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 85.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 83.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 81.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 81.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 79.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 79.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 79.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 78.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 76.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 75.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 75.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 73.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 72.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 70.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 70.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 68.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 65.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 59.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 58.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 55.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 54.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 53.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 52.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 52.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 51.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 48.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 47.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 47.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 45.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 44.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 43.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 42.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 41.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 37.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 35.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 32.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 28.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 27.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 22.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 17.9
FF:10159-103A6 76 years, female 19.5
FF:10181-103D1 60 years, female 16.3

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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