MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:704.0 nTPM
HPA Brain:231.1 nTPM
GTEx:704.0 nTPM
FANTOM5:30.5 Scaled Tags Per Million
Mouse:20.7 nTPM
Allen mouse:2.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 231.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.0
2666 Male, age 74, left hemisphere 142.5
2219 Male, age 76, both hemispheres 101.8
2828 Female, age 72, unknown 96.5
2586 Male, age 75, left hemisphere 85.2
1833 Male, age 53, unknown 71.7
1827 Male, age 72, unknown 65.5
1830 Male, age 51, unknown 60.9
1870 Female, age 42, unknown 59.0
2019 Male, age 18, unknown 49.7
2411 Female, age 72, unknown 46.7
Dorsal raphe nucleus
nTPM: 78.7
2298 Female, age 72, unknown 94.0
2047 Male, age 72, unknown 92.5
2750 Male, age 76, both hemispheres 90.8
2016 Female, age 72, unknown 65.5
1828 Male, age 53, unknown 50.8
Inferior colliculus
nTPM: 47.0
1890 Male, age 53, unknown 62.0
2097 Female, age 72, unknown 42.9
2849 Male, age 72, unknown 42.4
1848 Female, age 42, unknown 40.5
Median raphe nucleus
nTPM: 97.4
2220 Male, age 76, midline 97.4
Periaquaductal grey, anterior
nTPM: 84.3
1795 Male, age 51, unknown 109.3
1947 Male, age 18, unknown 102.9
2502 Female, age 75, unknown 40.7
Periaquaductal grey, dorsal
nTPM: 71.2
1840 Male, age 53, unknown 92.7
2850 Male, age 76, both hemispheres 82.7
2464 Female, age 72, unknown 54.9
1831 Male, age 72, unknown 54.7
Periaquaductal grey, lateral
nTPM: 69.2
2272 Male, age 74, both hemispheres 82.6
2140 Male, age 76, both hemispheres 69.1
2053 Male, age 18, unknown 56.0
Pretectal area
nTPM: 76.7
1817 Female, age 42, unknown 133.4
1815 Male, age 53, unknown 97.3
2007 Male, age 72, unknown 93.2
2825 Male, age 18, unknown 87.5
2224 Female, age 72, unknown 85.9
1816 Male, age 51, unknown 78.3
1944 Female, age 72, unknown 70.0
2273 Male, age 74, both hemispheres 55.6
2667 Female, age 75, unknown 48.7
2316 Male, age 76, right hemisphere 47.5
2407 Male, age 75, both hemispheres 46.1
Red nucleus
nTPM: 92.4
2725 Female, age 75, unknown 142.4
2823 Male, age 76, right hemisphere 124.7
2584 Male, age 75, left hemisphere 116.7
1821 Female, age 72, unknown 98.3
2227 Male, age 72, unknown 94.9
2769 Male, age 72, unknown 93.6
2503 Female, age 72, unknown 92.4
1865 Male, age 51, unknown 89.5
1954 Female, age 42, unknown 81.0
1904 Male, age 53, unknown 79.0
2588 Male, age 74, left hemisphere 51.2
2785 Male, age 18, unknown 45.4
Substantia nigra
nTPM: 231.1
1851 Male, age 51, unknown 350.7
2699 Male, age 18, unknown 342.0
1916 Female, age 42, unknown 313.1
2590 Female, age 75, unknown 302.1
2409 Female, age 72, unknown 269.2
2665 Male, age 74, both hemispheres 178.4
2241 Male, age 72, unknown 166.1
2583 Male, age 75, right hemisphere 166.0
1889 Female, age 72, unknown 131.0
1941 Male, age 53, unknown 92.3
Superior colliculus
nTPM: 66.2
2587 Male, age 74, left hemisphere 99.7
2261 Male, age 18, unknown 84.2
1796 Male, age 53, unknown 79.2
2087 Female, age 72, unknown 78.4
2668 Female, age 75, unknown 76.4
1995 Male, age 72, unknown 70.4
1895 Male, age 76, right hemisphere 55.4
1913 Female, age 42, unknown 46.8
2664 Male, age 75, both hemispheres 38.1
1839 Male, age 51, unknown 33.3
Ventral tegmental area
nTPM: 132.6
1915 Female, age 42, unknown 235.8
2021 Male, age 53, unknown 159.4
2410 Female, age 72, unknown 130.7
1942 Male, age 51, unknown 106.8
2218 Male, age 76, both hemispheres 104.1
2223 Female, age 72, unknown 58.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 704.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 704.0
Samples: 183

Max nTPM: 2350.9
Min nTPM: 20.8
Std nTPM: 444.9
Median nTPM: 625.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2350.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2296.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1925.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1906.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1899.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 1809.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1806.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1756.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1747.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1598.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1597.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.5
FF:10158-103A5 76 years, female 30.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 22.6
Min nTPM: 19.6
Sample A Male 19.6
Sample B Male 20.1
Sample C Female 20.5
Sample D Female 22.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
68910959 Antisense, RP_041214_01_G03, Mouse strain C57BL/6J (56 days, male) 2.5

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