A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2503.6
nTPM
Monaco:
328.7
nTPM
Schmiedel:
225.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2503.6
HPA sample
nTPM
Memory B-cell nTPM: 2503.6
Samples: 6
Max nTPM: 2892.3
Min nTPM: 2280.5
P10809_1017
2328.2
P10809_1025
2501.3
P10809_1044
2280.5
P10809_1063
2530.4
P10809_1092
2489.0
P10809_1105
2892.3
Naive B-cell nTPM: 2456.1
Samples: 6
Max nTPM: 2761.1
Min nTPM: 2117.1
P10809_1011
2761.1
P10809_1029
2372.1
P10809_1048
2304.8
P10809_1067
2450.6
P10809_1091
2117.1
P10809_1104
2731.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
328.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 328.7
Samples: 4
Max nTPM: 535.6
Min nTPM: 70.4
RHH5310_R3677
283.2
RHH5218_R3590
70.4
RHH5247_R3619
535.6
RHH5276_R3648
425.5
Naive B-cell nTPM: 289.7
Samples: 4
Max nTPM: 538.4
Min nTPM: 99.2
RHH5308_R3675
308.4
RHH5216_R3588
99.2
RHH5245_R3617
538.4
RHH5274_R3646
212.9
Non-switched memory B-cell nTPM: 241.2
Samples: 4
Max nTPM: 424.2
Min nTPM: 94.4
RHH5309_R3676
350.5
RHH5217_R3589
94.4
RHH5246_R3618
95.7
RHH5275_R3647
424.2
Plasmablast nTPM: 261.2
Samples: 4
Max nTPM: 316.9
Min nTPM: 151.1
RHH5312_R3679
316.9
RHH5220_R3592
151.1
RHH5249_R3621
291.3
RHH5278_R3650
285.4
Switched memory B-cell nTPM: 214.0
Samples: 4
Max nTPM: 300.8
Min nTPM: 129.8
RHH5311_R3678
293.5
RHH5219_R3591
129.8
RHH5248_R3620
132.0
RHH5277_R3649
300.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
225.5
Schmiedel sample id
TPM
Naive B-cell TPM: 225.5
Samples: 91
Max TPM: 473.2
Min TPM: 17.0
B_CELL_NAIVE_1
473.2
B_CELL_NAIVE_2
433.5
B_CELL_NAIVE_3
426.7
B_CELL_NAIVE_4
422.8
B_CELL_NAIVE_5
412.2
B_CELL_NAIVE_6
402.6
B_CELL_NAIVE_7
401.6
B_CELL_NAIVE_8
391.5
B_CELL_NAIVE_9
390.7
B_CELL_NAIVE_10
389.4
B_CELL_NAIVE_11
386.1
B_CELL_NAIVE_12
359.4
B_CELL_NAIVE_13
348.2
B_CELL_NAIVE_14
346.8
B_CELL_NAIVE_15
338.3
B_CELL_NAIVE_16
336.0
B_CELL_NAIVE_17
331.6
B_CELL_NAIVE_18
327.8
B_CELL_NAIVE_19
319.6
B_CELL_NAIVE_20
318.7
B_CELL_NAIVE_21
318.2
B_CELL_NAIVE_22
316.6
B_CELL_NAIVE_23
311.3
B_CELL_NAIVE_24
311.3
B_CELL_NAIVE_25
306.4
B_CELL_NAIVE_26
303.1
B_CELL_NAIVE_27
299.5
B_CELL_NAIVE_28
295.7
B_CELL_NAIVE_29
290.6
B_CELL_NAIVE_30
290.2
B_CELL_NAIVE_31
289.4
B_CELL_NAIVE_32
281.9
B_CELL_NAIVE_33
279.9
B_CELL_NAIVE_34
278.6
B_CELL_NAIVE_35
275.9
B_CELL_NAIVE_36
269.9
B_CELL_NAIVE_37
268.5
B_CELL_NAIVE_38
261.1
B_CELL_NAIVE_39
257.6
B_CELL_NAIVE_40
257.4
B_CELL_NAIVE_41
252.9
B_CELL_NAIVE_42
243.0
B_CELL_NAIVE_43
242.4
B_CELL_NAIVE_44
240.3
B_CELL_NAIVE_45
232.1
B_CELL_NAIVE_46
225.7
B_CELL_NAIVE_47
224.2
B_CELL_NAIVE_48
223.9
B_CELL_NAIVE_49
219.7
B_CELL_NAIVE_50
214.9
B_CELL_NAIVE_51
214.2
B_CELL_NAIVE_52
206.7
B_CELL_NAIVE_53
199.0
B_CELL_NAIVE_54
195.5
B_CELL_NAIVE_55
191.6
B_CELL_NAIVE_56
191.6
B_CELL_NAIVE_57
189.4
B_CELL_NAIVE_58
188.4
B_CELL_NAIVE_59
183.1
B_CELL_NAIVE_60
179.0
B_CELL_NAIVE_61
158.9
B_CELL_NAIVE_62
152.7
B_CELL_NAIVE_63
152.5
B_CELL_NAIVE_64
150.1
B_CELL_NAIVE_65
144.5
B_CELL_NAIVE_66
143.1
B_CELL_NAIVE_67
137.4
B_CELL_NAIVE_68
132.8
B_CELL_NAIVE_69
130.4
B_CELL_NAIVE_70
124.7
B_CELL_NAIVE_71
120.9
B_CELL_NAIVE_72
112.8
B_CELL_NAIVE_73
108.2
B_CELL_NAIVE_74
107.5
B_CELL_NAIVE_75
107.0
B_CELL_NAIVE_76
105.0
B_CELL_NAIVE_77
102.7
B_CELL_NAIVE_78
87.7
B_CELL_NAIVE_79
84.6
B_CELL_NAIVE_80
83.8
B_CELL_NAIVE_81
74.7
B_CELL_NAIVE_82
71.0
B_CELL_NAIVE_83
64.2
B_CELL_NAIVE_84
55.8
B_CELL_NAIVE_85
53.8
B_CELL_NAIVE_86
43.2
B_CELL_NAIVE_87
40.9
B_CELL_NAIVE_88
26.0
B_CELL_NAIVE_89
24.6
B_CELL_NAIVE_90
20.5
B_CELL_NAIVE_91
17.0
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