A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1093.7
nTPM
Monaco:
175.0
nTPM
Schmiedel:
181.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1093.7
HPA sample
nTPM
Classical monocyte nTPM: 1093.7
Samples: 6
Max nTPM: 1771.8
Min nTPM: 756.3
P10809_1003
1771.8
P10809_1020
756.3
P10809_1039
867.6
P10809_1058
1007.9
P10809_1080
756.9
P10809_1107
1401.5
Intermediate monocyte nTPM: 899.0
Samples: 6
Max nTPM: 1595.6
Min nTPM: 570.7
P10809_1004
645.3
P10809_1023
910.8
P10809_1042
880.1
P10809_1061
570.7
P10809_1081
791.4
P10809_1108
1595.6
Non-classical monocyte nTPM: 780.8
Samples: 5
Max nTPM: 1205.0
Min nTPM: 557.9
P10809_1005
819.8
P10809_1053
653.5
P10809_1072
557.9
P10809_1082
667.6
P10809_1109
1205.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
175.0
Monaco sample
nTPM
Classical monocyte nTPM: 102.0
Samples: 4
Max nTPM: 153.0
Min nTPM: 53.3
RHH5313_R3680
153.0
RHH5221_R3593
94.2
RHH5250_R3622
53.3
RHH5279_R3651
107.4
Intermediate monocyte nTPM: 175.0
Samples: 4
Max nTPM: 231.1
Min nTPM: 93.8
RHH5314_R3681
179.7
RHH5222_R3594
231.1
RHH5251_R3623
195.2
RHH5280_R3652
93.8
Non-classical monocyte nTPM: 130.3
Samples: 4
Max nTPM: 174.4
Min nTPM: 76.3
RHH5315_R3682
174.4
RHH5223_R3595
147.6
RHH5252_R3624
122.7
RHH5281_R3653
76.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
181.6
Schmiedel sample id
TPM
Classical monocyte TPM: 181.6
Samples: 91
Max TPM: 337.9
Min TPM: 47.7
MONOCYTES_1
337.9
MONOCYTES_2
333.7
MONOCYTES_3
328.3
MONOCYTES_4
307.8
MONOCYTES_5
303.7
MONOCYTES_6
299.0
MONOCYTES_7
275.0
MONOCYTES_8
264.3
MONOCYTES_9
263.7
MONOCYTES_10
263.6
MONOCYTES_11
263.1
MONOCYTES_12
261.7
MONOCYTES_13
261.2
MONOCYTES_14
260.4
MONOCYTES_15
253.7
MONOCYTES_16
251.4
MONOCYTES_17
249.3
MONOCYTES_18
247.5
MONOCYTES_19
247.1
MONOCYTES_20
244.8
MONOCYTES_21
244.8
MONOCYTES_22
242.7
MONOCYTES_23
239.9
MONOCYTES_24
237.9
MONOCYTES_25
236.2
MONOCYTES_26
234.0
MONOCYTES_27
232.1
MONOCYTES_28
230.0
MONOCYTES_29
216.4
MONOCYTES_30
215.9
MONOCYTES_31
215.8
MONOCYTES_32
215.1
MONOCYTES_33
214.4
MONOCYTES_34
210.4
MONOCYTES_35
208.2
MONOCYTES_36
207.2
MONOCYTES_37
206.5
MONOCYTES_38
205.5
MONOCYTES_39
201.2
MONOCYTES_40
199.4
MONOCYTES_41
192.6
MONOCYTES_42
192.4
MONOCYTES_43
192.1
MONOCYTES_44
185.2
MONOCYTES_45
180.6
MONOCYTES_46
176.5
MONOCYTES_47
164.4
MONOCYTES_48
164.4
MONOCYTES_49
164.2
MONOCYTES_50
164.1
MONOCYTES_51
160.5
MONOCYTES_52
159.2
MONOCYTES_53
158.7
MONOCYTES_54
158.3
MONOCYTES_55
156.2
MONOCYTES_56
155.1
MONOCYTES_57
152.4
MONOCYTES_58
148.3
MONOCYTES_59
147.4
MONOCYTES_60
146.2
MONOCYTES_61
142.6
MONOCYTES_62
142.2
MONOCYTES_63
138.2
MONOCYTES_64
136.9
MONOCYTES_65
131.7
MONOCYTES_66
128.8
MONOCYTES_67
128.7
MONOCYTES_68
127.2
MONOCYTES_69
125.6
MONOCYTES_70
124.8
MONOCYTES_71
124.2
MONOCYTES_72
121.7
MONOCYTES_73
121.4
MONOCYTES_74
117.0
MONOCYTES_75
116.2
MONOCYTES_76
113.6
MONOCYTES_77
112.9
MONOCYTES_78
109.8
MONOCYTES_79
102.2
MONOCYTES_80
88.7
MONOCYTES_81
88.0
MONOCYTES_82
87.9
MONOCYTES_83
85.0
MONOCYTES_84
78.7
MONOCYTES_85
76.9
MONOCYTES_86
76.4
MONOCYTES_87
74.0
MONOCYTES_88
73.8
MONOCYTES_89
69.0
MONOCYTES_90
64.7
MONOCYTES_91
47.7
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Non-classical monocyte TPM: 115.7
Samples: 90
Max TPM: 293.2
Min TPM: 15.7
M2_1
293.2
M2_2
217.2
M2_3
216.4
M2_4
214.4
M2_5
209.5
M2_6
206.8
M2_7
205.7
M2_8
205.0
M2_9
204.1
M2_10
197.4
M2_11
187.7
M2_12
185.7
M2_13
184.6
M2_14
182.6
M2_15
181.6
M2_16
180.7
M2_17
176.2
M2_18
176.1
M2_19
175.6
M2_20
169.1
M2_21
160.6
M2_22
157.5
M2_23
155.5
M2_24
154.5
M2_25
148.9
M2_26
147.5
M2_27
146.9
M2_28
145.4
M2_29
145.3
M2_30
141.0
M2_31
139.6
M2_32
134.5
M2_33
134.1
M2_34
133.2
M2_35
131.1
M2_36
130.3
M2_37
130.0
M2_38
128.6
M2_39
126.7
M2_40
125.4
M2_41
120.8
M2_42
119.5
M2_43
119.5
M2_44
116.6
M2_45
114.6
M2_46
113.9
M2_47
112.5
M2_48
111.3
M2_49
110.3
M2_50
110.2
M2_51
109.5
M2_52
104.9
M2_53
104.1
M2_54
104.0
M2_55
100.5
M2_56
96.2
M2_57
96.0
M2_58
89.4
M2_59
87.7
M2_60
84.0
M2_61
84.0
M2_62
82.6
M2_63
80.3
M2_64
79.9
M2_65
75.0
M2_66
74.8
M2_67
68.1
M2_68
65.1
M2_69
64.8
M2_70
59.4
M2_71
57.7
M2_72
57.4
M2_73
55.7
M2_74
52.9
M2_75
47.1
M2_76
45.9
M2_77
45.8
M2_78
45.6
M2_79
43.7
M2_80
40.1
M2_81
37.8
M2_82
37.8
M2_83
34.3
M2_84
31.9
M2_85
29.9
M2_86
27.5
M2_87
27.5
M2_88
18.3
M2_89
16.3
M2_90
15.7
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