A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1266.7
nTPM
Monaco:
105.8
nTPM
Schmiedel:
175.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1266.7
HPA sample
nTPM
NK-cell nTPM: 1266.7
Samples: 6
Max nTPM: 1540.7
Min nTPM: 674.9
P10809_1013
1177.2
P10809_1033
1498.7
P10809_1052
1174.3
P10809_1071
1540.7
P10809_1093
674.9
P10809_1103
1534.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.8
Monaco sample
nTPM
NK-cell nTPM: 105.8
Samples: 4
Max nTPM: 124.0
Min nTPM: 66.8
RHH5316_R3683
121.7
RHH5224_R3596
66.8
RHH5253_R3625
124.0
RHH5282_R3654
110.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
175.9
Schmiedel sample id
TPM
NK-cell TPM: 175.8
Samples: 90
Max TPM: 403.4
Min TPM: 26.0
NK_1
403.4
NK_2
385.7
NK_3
378.3
NK_4
368.4
NK_5
367.1
NK_6
364.1
NK_7
351.1
NK_8
321.8
NK_9
310.6
NK_10
307.6
NK_11
300.9
NK_12
289.4
NK_13
288.3
NK_14
275.4
NK_15
274.2
NK_16
272.4
NK_17
252.5
NK_18
242.7
NK_19
241.6
NK_20
241.1
NK_21
239.8
NK_22
231.4
NK_23
227.9
NK_24
226.1
NK_25
225.8
NK_26
223.1
NK_27
222.6
NK_28
220.2
NK_29
218.3
NK_30
214.0
NK_31
210.8
NK_32
210.0
NK_33
207.6
NK_34
205.3
NK_35
205.2
NK_36
201.9
NK_37
199.7
NK_38
195.2
NK_39
186.9
NK_40
177.7
NK_41
174.2
NK_42
173.7
NK_43
170.0
NK_44
168.2
NK_45
167.6
NK_46
162.1
NK_47
160.9
NK_48
153.9
NK_49
151.2
NK_50
148.8
NK_51
147.3
NK_52
141.3
NK_53
136.5
NK_54
135.6
NK_55
135.0
NK_56
132.3
NK_57
129.3
NK_58
123.9
NK_59
123.9
NK_60
122.2
NK_61
120.2
NK_62
118.4
NK_63
116.7
NK_64
116.5
NK_65
114.8
NK_66
107.0
NK_67
103.8
NK_68
103.1
NK_69
102.1
NK_70
99.5
NK_71
95.6
NK_72
93.0
NK_73
91.3
NK_74
91.2
NK_75
88.6
NK_76
82.0
NK_77
80.9
NK_78
79.4
NK_79
68.4
NK_80
63.4
NK_81
62.6
NK_82
56.2
NK_83
54.2
NK_84
52.7
NK_85
52.5
NK_86
39.1
NK_87
37.3
NK_88
33.7
NK_89
32.2
NK_90
26.0
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