MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:107.4 nTPM
HPA Brain:73.2 nTPM
GTEx:107.4 nTPM
FANTOM5:47.0 Scaled Tags Per Million
Pig:47.3 nTPM
Mouse:28.0 nTPM
Allen mouse:2.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 73.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.4
2586 Male, age 75, left hemisphere 83.0
1827 Male, age 72, unknown 72.3
2666 Male, age 74, left hemisphere 62.9
2219 Male, age 76, both hemispheres 61.7
2828 Female, age 72, unknown 60.7
2411 Female, age 72, unknown 58.2
1870 Female, age 42, unknown 57.9
2019 Male, age 18, unknown 55.7
1833 Male, age 53, unknown 48.8
1830 Male, age 51, unknown 42.5
Dorsal raphe nucleus
nTPM: 62.1
2298 Female, age 72, unknown 72.9
2047 Male, age 72, unknown 69.4
2750 Male, age 76, both hemispheres 60.0
1828 Male, age 53, unknown 58.3
2016 Female, age 72, unknown 49.8
Inferior colliculus
nTPM: 49.8
2097 Female, age 72, unknown 55.0
1890 Male, age 53, unknown 53.9
1848 Female, age 42, unknown 49.3
2849 Male, age 72, unknown 41.0
Median raphe nucleus
nTPM: 61.4
2220 Male, age 76, midline 61.4
Periaquaductal grey, anterior
nTPM: 73.2
1795 Male, age 51, unknown 79.9
1947 Male, age 18, unknown 75.0
2502 Female, age 75, unknown 64.7
Periaquaductal grey, dorsal
nTPM: 51.5
1831 Male, age 72, unknown 54.8
1840 Male, age 53, unknown 53.2
2850 Male, age 76, both hemispheres 53.2
2464 Female, age 72, unknown 44.8
Periaquaductal grey, lateral
nTPM: 51.7
2053 Male, age 18, unknown 56.4
2272 Male, age 74, both hemispheres 51.5
2140 Male, age 76, both hemispheres 47.2
Pretectal area
nTPM: 66.8
1816 Male, age 51, unknown 94.1
2007 Male, age 72, unknown 86.0
1817 Female, age 42, unknown 83.7
1944 Female, age 72, unknown 76.9
1815 Male, age 53, unknown 70.0
2667 Female, age 75, unknown 64.6
2224 Female, age 72, unknown 57.5
2825 Male, age 18, unknown 56.2
2273 Male, age 74, both hemispheres 53.2
2407 Male, age 75, both hemispheres 49.7
2316 Male, age 76, right hemisphere 42.6
Red nucleus
nTPM: 57.6
2725 Female, age 75, unknown 69.7
1821 Female, age 72, unknown 68.2
2588 Male, age 74, left hemisphere 62.4
2785 Male, age 18, unknown 58.9
2503 Female, age 72, unknown 57.7
1954 Female, age 42, unknown 56.7
2584 Male, age 75, left hemisphere 56.4
1904 Male, age 53, unknown 55.3
2769 Male, age 72, unknown 54.2
2227 Male, age 72, unknown 52.0
1865 Male, age 51, unknown 50.9
2823 Male, age 76, right hemisphere 49.0
Substantia nigra
nTPM: 72.9
1916 Female, age 42, unknown 103.1
1851 Male, age 51, unknown 85.0
2665 Male, age 74, both hemispheres 78.7
1941 Male, age 53, unknown 75.4
1889 Female, age 72, unknown 74.7
2699 Male, age 18, unknown 67.8
2583 Male, age 75, right hemisphere 65.9
2241 Male, age 72, unknown 65.8
2409 Female, age 72, unknown 58.3
2590 Female, age 75, unknown 54.8
Superior colliculus
nTPM: 60.6
2668 Female, age 75, unknown 73.1
1796 Male, age 53, unknown 71.7
2087 Female, age 72, unknown 68.7
2261 Male, age 18, unknown 67.6
2664 Male, age 75, both hemispheres 67.4
2587 Male, age 74, left hemisphere 60.0
1895 Male, age 76, right hemisphere 52.0
1913 Female, age 42, unknown 50.4
1839 Male, age 51, unknown 48.4
1995 Male, age 72, unknown 47.2
Ventral tegmental area
nTPM: 65.2
1915 Female, age 42, unknown 77.1
2218 Male, age 76, both hemispheres 71.8
1942 Male, age 51, unknown 66.8
2410 Female, age 72, unknown 64.7
2021 Male, age 53, unknown 56.4
2223 Female, age 72, unknown 54.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 107.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 107.4
Samples: 183

Max nTPM: 208.9
Min nTPM: 36.7
Std nTPM: 32.7
Median nTPM: 102.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 208.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 197.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 192.8
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 188.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 185.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 182.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 182.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 179.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 173.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 172.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 172.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.0
FF:10158-103A5 76 years, female 47.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 47.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.7
Samples: 4

Max nTPM: 54.4
Min nTPM: 30.3
Sample A Female 54.4
Sample B Female 34.8
Sample C Male 43.1
Sample D Male 30.3
Midbrain
nTPM: 41.7
Samples: 4

Max nTPM: 52.8
Min nTPM: 37.0
Sample A Female 52.8
Sample B Female 37.5
Sample C Male 37.0
Sample D Male 39.3
Periaqueductal gray
nTPM: 38.5
Samples: 3

Max nTPM: 44.8
Min nTPM: 32.0
Sample B Female 32.0
Sample C Male 44.8
Sample D Male 38.6
Superior colliculi
nTPM: 47.3
Samples: 4

Max nTPM: 54.3
Min nTPM: 42.4
Sample A Female 54.3
Sample B Female 42.4
Sample C Male 47.7
Sample D Male 44.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 31.0
Min nTPM: 24.6
Sample A Male 27.8
Sample B Male 28.7
Sample C Female 24.6
Sample D Female 31.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
68637844 Antisense, RP_050126_01_G02, Mouse strain C57BL/6J (56 days, male) 2.7

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