We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
OLFM1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • OLFM1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:616.0 nTPM
HPA Brain:361.3 nTPM
GTEx:616.0 nTPM
FANTOM5:347.7 Scaled Tags Per Million
Pig:539.7 nTPM
Mouse:1058.1 nTPM
Allen mouse:23.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

361.3
Sample id Sample description nTPM
Amygdala
nTPM: 171.7
2517 Female, age 94, left hemisphere 204.6
1987 Female, age 91, left hemisphere 198.2
2514 Male, age 75, right hemisphere 189.4
2814 Male, age 76, right hemisphere 166.7
2695 Female, age 67, right hemisphere 99.6
Basal amygdala
nTPM: 318.4
2243 Female, age 91, right hemisphere 490.5
2110 Male, age 80, left hemisphere 310.1
2685 Female, age 94, left hemisphere 304.0
2609 Male, age 75, right hemisphere 283.6
2827 Female, age 67, right hemisphere 283.1
1955 Male, age 76, both hemispheres 239.1
Central amygdala
nTPM: 205.7
2826 Female, age 94, left hemisphere 298.0
2239 Male, age 80, left hemisphere 294.5
2515 Male, age 75, right hemisphere 186.7
1905 Male, age 76, both hemispheres 163.7
2701 Female, age 91, right hemisphere 85.3
Corticomedial amygdala
nTPM: 361.3
2829 Male, age 80, left hemisphere 541.7
2242 Female, age 91, right hemisphere 501.4
2535 Female, age 67, right hemisphere 308.5
2428 Male, age 75, right hemisphere 284.2
2429 Female, age 94, left hemisphere 278.1
2240 Male, age 76, both hemispheres 254.0
Lateral amygdala
nTPM: 223.2
2534 Female, age 94, left hemisphere 375.0
2256 Male, age 80, left hemisphere 242.0
2516 Male, age 75, right hemisphere 210.6
1883 Male, age 76, both hemispheres 201.3
2830 Female, age 67, right hemisphere 168.7
2255 Female, age 91, right hemisphere 141.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

616.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 616.0
Samples: 181

Max nTPM: 1939.2
Min nTPM: 146.9
Std nTPM: 270.4
Median nTPM: 565.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1939.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1479.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1314.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1276.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1207.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1203.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1171.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1166.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1135.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1132.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1127.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 1057.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1056.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1048.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1042.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1005.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 998.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 995.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 989.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 973.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 956.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 927.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 926.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 901.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 897.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 893.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 893.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 891.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 889.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 880.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 858.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 858.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 854.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 851.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 829.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 826.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 820.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 801.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 800.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 792.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 786.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 778.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 769.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 766.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 752.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 727.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 722.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 716.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 708.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 703.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 687.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 686.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 678.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 677.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 675.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 673.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 668.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 662.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 661.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 661.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 655.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 655.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 654.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 654.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 653.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 650.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 648.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 643.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 641.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 639.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 636.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 635.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 632.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 629.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 627.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 627.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 622.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 620.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 619.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 615.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 615.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 607.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 607.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 605.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 604.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 603.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 598.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 588.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 582.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 577.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 565.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 564.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 562.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 561.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 558.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 554.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 554.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 553.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 552.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 549.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 547.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 545.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 542.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 534.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 533.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 530.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 529.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 529.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 528.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 526.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 524.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 524.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 518.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 516.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 515.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 511.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 508.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 505.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 503.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 497.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 495.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 489.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 488.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 479.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 478.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 474.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 474.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 463.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 462.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 457.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 445.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 442.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 441.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 432.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 427.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 422.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 421.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 420.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 420.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 419.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 408.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 404.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 402.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 396.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 391.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 387.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 382.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 380.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 373.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 369.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 363.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 361.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 348.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 347.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 347.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 345.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 340.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 323.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 322.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 321.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 321.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 318.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 312.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 309.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 309.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 309.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 307.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 300.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 273.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 266.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 266.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 262.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 249.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 239.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 236.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 232.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 227.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 206.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 204.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 176.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 146.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

347.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 347.7
FF:10151-102I7 76 years, female 347.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

539.7
Pig sample Sample description nTPM
Amygdala
nTPM: 539.8
Samples: 4

Max nTPM: 765.9
Min nTPM: 365.1
Sample A Female 765.9
Sample B Female 365.1
Sample C Male 538.3
Sample D Male 489.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1058.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 1058.1
Samples: 4

Max nTPM: 1126.6
Min nTPM: 1016.4
Sample A Male 1016.4
Sample B Male 1026.5
Sample C Female 1126.6
Sample D Female 1062.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

23.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.5
760 Antisense, RP_040324_01_F03, Mouse strain C57BL/6J (56 days, male) 23.5
761 Antisense, RP_040324_01_F03, Mouse strain C57BL/6J (56 days, male) 18.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo