MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:124.9 nTPM
HPA Brain:138.6 nTPM
GTEx:124.9 nTPM
FANTOM5:33.1 Scaled Tags Per Million
Pig:210.2 nTPM
Mouse:165.2 nTPM
Allen mouse:10.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 138.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.0
2586 Male, age 75, left hemisphere 233.4
2219 Male, age 76, both hemispheres 125.7
2019 Male, age 18, unknown 114.6
1827 Male, age 72, unknown 102.3
2828 Female, age 72, unknown 95.1
2666 Male, age 74, left hemisphere 90.2
2411 Female, age 72, unknown 79.6
1833 Male, age 53, unknown 73.2
1870 Female, age 42, unknown 68.1
1830 Male, age 51, unknown 67.3
Dorsal raphe nucleus
nTPM: 96.0
2298 Female, age 72, unknown 108.7
1828 Male, age 53, unknown 104.2
2047 Male, age 72, unknown 99.3
2016 Female, age 72, unknown 88.3
2750 Male, age 76, both hemispheres 79.3
Inferior colliculus
nTPM: 111.4
2097 Female, age 72, unknown 158.7
1890 Male, age 53, unknown 129.9
1848 Female, age 42, unknown 86.7
2849 Male, age 72, unknown 70.2
Median raphe nucleus
nTPM: 90.5
2220 Male, age 76, midline 90.5
Periaquaductal grey, anterior
nTPM: 123.0
1795 Male, age 51, unknown 163.7
2502 Female, age 75, unknown 112.6
1947 Male, age 18, unknown 92.7
Periaquaductal grey, dorsal
nTPM: 89.2
1831 Male, age 72, unknown 130.6
1840 Male, age 53, unknown 79.4
2850 Male, age 76, both hemispheres 73.6
2464 Female, age 72, unknown 73.1
Periaquaductal grey, lateral
nTPM: 84.0
2053 Male, age 18, unknown 97.3
2272 Male, age 74, both hemispheres 81.6
2140 Male, age 76, both hemispheres 73.1
Pretectal area
nTPM: 138.6
1816 Male, age 51, unknown 223.1
1944 Female, age 72, unknown 203.6
2007 Male, age 72, unknown 176.6
2667 Female, age 75, unknown 176.0
1817 Female, age 42, unknown 161.4
1815 Male, age 53, unknown 138.4
2224 Female, age 72, unknown 101.6
2273 Male, age 74, both hemispheres 94.5
2407 Male, age 75, both hemispheres 91.8
2825 Male, age 18, unknown 84.5
2316 Male, age 76, right hemisphere 73.3
Red nucleus
nTPM: 78.7
2785 Male, age 18, unknown 122.8
2584 Male, age 75, left hemisphere 103.5
2588 Male, age 74, left hemisphere 88.7
2725 Female, age 75, unknown 87.9
1821 Female, age 72, unknown 78.1
1954 Female, age 42, unknown 76.9
1904 Male, age 53, unknown 68.7
2503 Female, age 72, unknown 67.9
2227 Male, age 72, unknown 67.5
1865 Male, age 51, unknown 65.5
2769 Male, age 72, unknown 64.7
2823 Male, age 76, right hemisphere 52.7
Substantia nigra
nTPM: 135.5
2665 Male, age 74, both hemispheres 218.5
2583 Male, age 75, right hemisphere 165.4
1916 Female, age 42, unknown 143.8
1889 Female, age 72, unknown 140.9
1941 Male, age 53, unknown 139.4
1851 Male, age 51, unknown 126.7
2241 Male, age 72, unknown 125.0
2590 Female, age 75, unknown 119.9
2409 Female, age 72, unknown 95.0
2699 Male, age 18, unknown 80.5
Superior colliculus
nTPM: 113.2
2261 Male, age 18, unknown 159.3
2087 Female, age 72, unknown 158.9
2664 Male, age 75, both hemispheres 151.3
1796 Male, age 53, unknown 146.6
1995 Male, age 72, unknown 102.4
1913 Female, age 42, unknown 94.2
2587 Male, age 74, left hemisphere 86.6
2668 Female, age 75, unknown 80.7
1839 Male, age 51, unknown 80.0
1895 Male, age 76, right hemisphere 72.0
Ventral tegmental area
nTPM: 121.9
2223 Female, age 72, unknown 166.5
1942 Male, age 51, unknown 120.5
2218 Male, age 76, both hemispheres 119.9
2410 Female, age 72, unknown 118.7
1915 Female, age 42, unknown 111.4
2021 Male, age 53, unknown 94.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 124.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 124.9
Samples: 183

Max nTPM: 736.3
Min nTPM: 19.7
Std nTPM: 69.1
Median nTPM: 119.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 736.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 516.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 260.5
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 242.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 233.0
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 220.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 215.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 210.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 204.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 198.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 186.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.1
FF:10158-103A5 76 years, female 33.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 210.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 141.1
Samples: 4

Max nTPM: 169.9
Min nTPM: 108.2
Sample A Female 169.9
Sample B Female 124.6
Sample C Male 161.5
Sample D Male 108.2
Midbrain
nTPM: 210.3
Samples: 4

Max nTPM: 366.3
Min nTPM: 88.2
Sample A Female 105.8
Sample B Female 88.2
Sample C Male 366.3
Sample D Male 280.7
Periaqueductal gray
nTPM: 75.8
Samples: 3

Max nTPM: 92.5
Min nTPM: 63.8
Sample B Female 71.2
Sample C Male 92.5
Sample D Male 63.8
Superior colliculi
nTPM: 183.2
Samples: 4

Max nTPM: 261.7
Min nTPM: 127.9
Sample A Female 187.0
Sample B Female 127.9
Sample C Male 261.7
Sample D Male 156.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 165.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 165.2
Samples: 4

Max nTPM: 175.0
Min nTPM: 157.4
Sample A Male 166.9
Sample B Male 161.5
Sample C Female 175.0
Sample D Female 157.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.5
760 Antisense, RP_040324_01_F03, Mouse strain C57BL/6J (56 days, male) 10.5
761 Antisense, RP_040324_01_F03, Mouse strain C57BL/6J (56 days, male) 9.0

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