A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
141.2
nTPM
Monaco:
80.5
nTPM
Schmiedel:
319.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
141.2
HPA sample
nTPM
Memory B-cell nTPM: 131.7
Samples: 6
Max nTPM: 261.8
Min nTPM: 66.1
P10809_1017
66.1
P10809_1025
118.9
P10809_1044
261.8
P10809_1063
129.1
P10809_1092
112.9
P10809_1105
101.3
Naive B-cell nTPM: 141.2
Samples: 6
Max nTPM: 254.7
Min nTPM: 85.1
P10809_1011
85.1
P10809_1029
118.7
P10809_1048
254.7
P10809_1067
143.9
P10809_1091
121.5
P10809_1104
123.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 74.3
Samples: 4
Max nTPM: 86.0
Min nTPM: 56.9
RHH5310_R3677
56.9
RHH5218_R3590
84.5
RHH5247_R3619
69.9
RHH5276_R3648
86.0
Naive B-cell nTPM: 76.5
Samples: 4
Max nTPM: 118.4
Min nTPM: 40.1
RHH5308_R3675
40.1
RHH5216_R3588
118.4
RHH5245_R3617
48.6
RHH5274_R3646
98.7
Non-switched memory B-cell nTPM: 80.5
Samples: 4
Max nTPM: 105.2
Min nTPM: 64.4
RHH5309_R3676
64.9
RHH5217_R3589
105.2
RHH5246_R3618
64.4
RHH5275_R3647
87.6
Plasmablast nTPM: 74.0
Samples: 4
Max nTPM: 82.6
Min nTPM: 59.5
RHH5312_R3679
59.5
RHH5220_R3592
71.7
RHH5249_R3621
82.1
RHH5278_R3650
82.6
Switched memory B-cell nTPM: 74.5
Samples: 4
Max nTPM: 97.2
Min nTPM: 54.7
RHH5311_R3678
97.2
RHH5219_R3591
65.7
RHH5248_R3620
54.7
RHH5277_R3649
80.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
319.2
Schmiedel sample id
TPM
Naive B-cell TPM: 319.2
Samples: 91
Max TPM: 502.6
Min TPM: 201.9
B_CELL_NAIVE_1
502.6
B_CELL_NAIVE_2
477.6
B_CELL_NAIVE_3
467.7
B_CELL_NAIVE_4
463.1
B_CELL_NAIVE_5
456.7
B_CELL_NAIVE_6
431.8
B_CELL_NAIVE_7
428.1
B_CELL_NAIVE_8
424.9
B_CELL_NAIVE_9
408.4
B_CELL_NAIVE_10
397.2
B_CELL_NAIVE_11
386.6
B_CELL_NAIVE_12
383.5
B_CELL_NAIVE_13
382.1
B_CELL_NAIVE_14
381.1
B_CELL_NAIVE_15
372.1
B_CELL_NAIVE_16
364.6
B_CELL_NAIVE_17
362.8
B_CELL_NAIVE_18
362.5
B_CELL_NAIVE_19
361.3
B_CELL_NAIVE_20
359.2
B_CELL_NAIVE_21
356.6
B_CELL_NAIVE_22
348.2
B_CELL_NAIVE_23
347.9
B_CELL_NAIVE_24
347.7
B_CELL_NAIVE_25
347.2
B_CELL_NAIVE_26
343.2
B_CELL_NAIVE_27
341.0
B_CELL_NAIVE_28
340.7
B_CELL_NAIVE_29
339.5
B_CELL_NAIVE_30
337.3
B_CELL_NAIVE_31
336.9
B_CELL_NAIVE_32
334.7
B_CELL_NAIVE_33
333.4
B_CELL_NAIVE_34
330.9
B_CELL_NAIVE_35
329.5
B_CELL_NAIVE_36
327.6
B_CELL_NAIVE_37
325.5
B_CELL_NAIVE_38
318.8
B_CELL_NAIVE_39
317.5
B_CELL_NAIVE_40
316.1
B_CELL_NAIVE_41
314.8
B_CELL_NAIVE_42
314.1
B_CELL_NAIVE_43
311.9
B_CELL_NAIVE_44
309.8
B_CELL_NAIVE_45
305.7
B_CELL_NAIVE_46
305.2
B_CELL_NAIVE_47
303.7
B_CELL_NAIVE_48
299.4
B_CELL_NAIVE_49
299.2
B_CELL_NAIVE_50
299.0
B_CELL_NAIVE_51
298.7
B_CELL_NAIVE_52
295.8
B_CELL_NAIVE_53
294.6
B_CELL_NAIVE_54
294.3
B_CELL_NAIVE_55
293.5
B_CELL_NAIVE_56
293.1
B_CELL_NAIVE_57
291.2
B_CELL_NAIVE_58
291.0
B_CELL_NAIVE_59
289.9
B_CELL_NAIVE_60
289.5
B_CELL_NAIVE_61
288.9
B_CELL_NAIVE_62
287.4
B_CELL_NAIVE_63
287.0
B_CELL_NAIVE_64
284.1
B_CELL_NAIVE_65
280.9
B_CELL_NAIVE_66
280.6
B_CELL_NAIVE_67
280.2
B_CELL_NAIVE_68
280.2
B_CELL_NAIVE_69
277.9
B_CELL_NAIVE_70
277.7
B_CELL_NAIVE_71
275.8
B_CELL_NAIVE_72
274.8
B_CELL_NAIVE_73
273.1
B_CELL_NAIVE_74
272.7
B_CELL_NAIVE_75
270.4
B_CELL_NAIVE_76
268.8
B_CELL_NAIVE_77
268.3
B_CELL_NAIVE_78
267.2
B_CELL_NAIVE_79
266.6
B_CELL_NAIVE_80
262.6
B_CELL_NAIVE_81
257.3
B_CELL_NAIVE_82
256.1
B_CELL_NAIVE_83
251.3
B_CELL_NAIVE_84
250.9
B_CELL_NAIVE_85
250.6
B_CELL_NAIVE_86
246.9
B_CELL_NAIVE_87
241.9
B_CELL_NAIVE_88
236.3
B_CELL_NAIVE_89
230.4
B_CELL_NAIVE_90
209.7
B_CELL_NAIVE_91
201.9
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