A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
127.7
nTPM
Monaco:
93.5
nTPM
Schmiedel:
290.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
127.7
HPA sample
nTPM
NK-cell nTPM: 127.7
Samples: 6
Max nTPM: 202.3
Min nTPM: 60.6
P10809_1013
60.6
P10809_1033
148.1
P10809_1052
107.0
P10809_1071
114.4
P10809_1093
202.3
P10809_1103
133.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.5
Monaco sample
nTPM
NK-cell nTPM: 93.5
Samples: 4
Max nTPM: 119.3
Min nTPM: 73.4
RHH5316_R3683
83.8
RHH5224_R3596
119.3
RHH5253_R3625
73.4
RHH5282_R3654
97.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
290.0
Schmiedel sample id
TPM
NK-cell TPM: 290.0
Samples: 90
Max TPM: 546.1
Min TPM: 185.4
NK_1
546.1
NK_2
429.5
NK_3
425.0
NK_4
420.4
NK_5
418.7
NK_6
413.6
NK_7
400.7
NK_8
392.3
NK_9
378.2
NK_10
376.8
NK_11
370.6
NK_12
366.1
NK_13
358.9
NK_14
357.5
NK_15
356.7
NK_16
354.7
NK_17
353.2
NK_18
343.5
NK_19
340.3
NK_20
338.8
NK_21
335.7
NK_22
333.4
NK_23
329.9
NK_24
326.5
NK_25
324.8
NK_26
324.3
NK_27
320.4
NK_28
319.1
NK_29
316.2
NK_30
312.9
NK_31
311.4
NK_32
310.4
NK_33
309.8
NK_34
309.4
NK_35
307.3
NK_36
305.7
NK_37
301.1
NK_38
296.9
NK_39
295.0
NK_40
291.2
NK_41
288.9
NK_42
287.6
NK_43
282.8
NK_44
282.8
NK_45
281.1
NK_46
279.6
NK_47
274.3
NK_48
274.1
NK_49
271.1
NK_50
269.9
NK_51
268.8
NK_52
266.6
NK_53
264.7
NK_54
261.9
NK_55
261.6
NK_56
257.5
NK_57
256.0
NK_58
252.4
NK_59
252.2
NK_60
250.6
NK_61
247.9
NK_62
246.7
NK_63
245.5
NK_64
243.9
NK_65
242.7
NK_66
240.9
NK_67
240.1
NK_68
235.6
NK_69
234.9
NK_70
234.9
NK_71
234.8
NK_72
231.0
NK_73
228.9
NK_74
226.9
NK_75
225.7
NK_76
224.1
NK_77
220.8
NK_78
220.1
NK_79
218.9
NK_80
217.7
NK_81
217.2
NK_82
215.0
NK_83
212.7
NK_84
210.0
NK_85
202.5
NK_86
199.1
NK_87
197.4
NK_88
195.3
NK_89
192.8
NK_90
185.4
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