A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
120.8
nTPM
Monaco:
128.8
nTPM
Schmiedel:
235.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
120.8
HPA sample
nTPM
Classical monocyte nTPM: 120.8
Samples: 6
Max nTPM: 154.4
Min nTPM: 82.9
P10809_1003
82.9
P10809_1020
125.2
P10809_1039
127.7
P10809_1058
154.4
P10809_1080
108.3
P10809_1107
126.5
Intermediate monocyte nTPM: 111.3
Samples: 6
Max nTPM: 143.1
Min nTPM: 74.7
P10809_1004
74.7
P10809_1023
128.2
P10809_1042
99.4
P10809_1061
143.1
P10809_1081
122.4
P10809_1108
100.0
Non-classical monocyte nTPM: 102.8
Samples: 5
Max nTPM: 126.5
Min nTPM: 72.8
P10809_1005
72.8
P10809_1053
102.1
P10809_1072
109.1
P10809_1082
126.5
P10809_1109
103.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
128.8
Monaco sample
nTPM
Classical monocyte nTPM: 128.8
Samples: 4
Max nTPM: 170.2
Min nTPM: 82.3
RHH5313_R3680
82.3
RHH5221_R3593
170.2
RHH5250_R3622
129.0
RHH5279_R3651
133.7
Intermediate monocyte nTPM: 97.7
Samples: 4
Max nTPM: 139.2
Min nTPM: 63.7
RHH5314_R3681
94.4
RHH5222_R3594
139.2
RHH5251_R3623
63.7
RHH5280_R3652
93.3
Non-classical monocyte nTPM: 111.8
Samples: 4
Max nTPM: 130.3
Min nTPM: 96.2
RHH5315_R3682
96.2
RHH5223_R3595
119.8
RHH5252_R3624
130.3
RHH5281_R3653
101.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
235.9
Schmiedel sample id
TPM
Classical monocyte TPM: 235.9
Samples: 91
Max TPM: 359.3
Min TPM: 166.3
MONOCYTES_1
359.3
MONOCYTES_2
311.6
MONOCYTES_3
301.6
MONOCYTES_4
296.4
MONOCYTES_5
295.3
MONOCYTES_6
286.7
MONOCYTES_7
286.5
MONOCYTES_8
286.0
MONOCYTES_9
284.3
MONOCYTES_10
281.5
MONOCYTES_11
281.1
MONOCYTES_12
280.3
MONOCYTES_13
274.2
MONOCYTES_14
272.5
MONOCYTES_15
268.5
MONOCYTES_16
267.3
MONOCYTES_17
266.6
MONOCYTES_18
266.4
MONOCYTES_19
265.0
MONOCYTES_20
260.5
MONOCYTES_21
259.3
MONOCYTES_22
257.8
MONOCYTES_23
256.2
MONOCYTES_24
255.6
MONOCYTES_25
255.3
MONOCYTES_26
255.0
MONOCYTES_27
253.8
MONOCYTES_28
253.7
MONOCYTES_29
253.4
MONOCYTES_30
252.3
MONOCYTES_31
252.1
MONOCYTES_32
251.4
MONOCYTES_33
250.7
MONOCYTES_34
247.7
MONOCYTES_35
244.9
MONOCYTES_36
241.2
MONOCYTES_37
239.6
MONOCYTES_38
238.4
MONOCYTES_39
238.0
MONOCYTES_40
237.0
MONOCYTES_41
236.4
MONOCYTES_42
236.0
MONOCYTES_43
235.7
MONOCYTES_44
235.6
MONOCYTES_45
233.6
MONOCYTES_46
232.4
MONOCYTES_47
231.2
MONOCYTES_48
229.9
MONOCYTES_49
229.6
MONOCYTES_50
229.6
MONOCYTES_51
228.4
MONOCYTES_52
227.2
MONOCYTES_53
225.1
MONOCYTES_54
221.8
MONOCYTES_55
221.2
MONOCYTES_56
220.8
MONOCYTES_57
220.8
MONOCYTES_58
220.1
MONOCYTES_59
219.1
MONOCYTES_60
218.8
MONOCYTES_61
218.7
MONOCYTES_62
218.5
MONOCYTES_63
218.2
MONOCYTES_64
218.0
MONOCYTES_65
216.9
MONOCYTES_66
216.0
MONOCYTES_67
216.0
MONOCYTES_68
215.9
MONOCYTES_69
215.0
MONOCYTES_70
210.8
MONOCYTES_71
210.3
MONOCYTES_72
209.5
MONOCYTES_73
208.6
MONOCYTES_74
208.2
MONOCYTES_75
207.8
MONOCYTES_76
206.2
MONOCYTES_77
204.7
MONOCYTES_78
199.9
MONOCYTES_79
199.5
MONOCYTES_80
198.4
MONOCYTES_81
195.6
MONOCYTES_82
195.6
MONOCYTES_83
194.8
MONOCYTES_84
188.3
MONOCYTES_85
183.6
MONOCYTES_86
180.5
MONOCYTES_87
179.7
MONOCYTES_88
178.1
MONOCYTES_89
176.7
MONOCYTES_90
176.3
MONOCYTES_91
166.3
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Non-classical monocyte TPM: 178.4
Samples: 90
Max TPM: 270.7
Min TPM: 121.6
M2_1
270.7
M2_2
259.9
M2_3
257.7
M2_4
241.9
M2_5
241.7
M2_6
237.5
M2_7
235.1
M2_8
234.8
M2_9
224.7
M2_10
223.6
M2_11
221.5
M2_12
221.1
M2_13
214.4
M2_14
214.3
M2_15
206.1
M2_16
204.9
M2_17
203.9
M2_18
203.7
M2_19
202.7
M2_20
202.5
M2_21
202.3
M2_22
200.5
M2_23
198.7
M2_24
197.6
M2_25
197.2
M2_26
196.6
M2_27
194.9
M2_28
194.6
M2_29
193.9
M2_30
192.5
M2_31
190.1
M2_32
188.6
M2_33
188.3
M2_34
187.9
M2_35
186.8
M2_36
186.0
M2_37
185.6
M2_38
182.3
M2_39
181.4
M2_40
180.1
M2_41
179.8
M2_42
179.2
M2_43
179.1
M2_44
178.8
M2_45
177.8
M2_46
177.2
M2_47
177.2
M2_48
176.3
M2_49
171.5
M2_50
170.2
M2_51
165.8
M2_52
165.1
M2_53
164.5
M2_54
164.5
M2_55
164.4
M2_56
164.0
M2_57
163.8
M2_58
162.2
M2_59
161.8
M2_60
160.6
M2_61
160.4
M2_62
160.0
M2_63
159.6
M2_64
159.4
M2_65
157.7
M2_66
156.1
M2_67
152.7
M2_68
152.3
M2_69
151.3
M2_70
151.1
M2_71
151.1
M2_72
149.0
M2_73
148.8
M2_74
148.7
M2_75
148.6
M2_76
146.9
M2_77
145.4
M2_78
141.8
M2_79
140.4
M2_80
139.0
M2_81
137.7
M2_82
135.6
M2_83
131.1
M2_84
128.1
M2_85
127.2
M2_86
126.4
M2_87
126.2
M2_88
125.8
M2_89
125.2
M2_90
121.6
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