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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
7714.7
Sample id
Sample description
nTPM
Amygdala nTPM: 7714.7
2695
Female, age 67, right hemisphere
14823.8
1987
Female, age 91, left hemisphere
8845.7
2814
Male, age 76, right hemisphere
7036.9
2517
Female, age 94, left hemisphere
4027.6
2514
Male, age 75, right hemisphere
3839.6
Basal amygdala nTPM: 4727.4
1955
Male, age 76, both hemispheres
6412.9
2609
Male, age 75, right hemisphere
4983.7
2110
Male, age 80, left hemisphere
4948.8
2243
Female, age 91, right hemisphere
4539.7
2827
Female, age 67, right hemisphere
4097.4
2685
Female, age 94, left hemisphere
3382.0
Central amygdala nTPM: 6503.5
2515
Male, age 75, right hemisphere
8699.1
1905
Male, age 76, both hemispheres
7433.7
2826
Female, age 94, left hemisphere
6348.4
2701
Female, age 91, right hemisphere
5254.7
2239
Male, age 80, left hemisphere
4781.5
Corticomedial amygdala nTPM: 4529.0
2242
Female, age 91, right hemisphere
5688.9
2428
Male, age 75, right hemisphere
5379.8
2240
Male, age 76, both hemispheres
5100.2
2829
Male, age 80, left hemisphere
4807.4
2535
Female, age 67, right hemisphere
3751.1
2429
Female, age 94, left hemisphere
2446.8
Lateral amygdala nTPM: 5654.7
1883
Male, age 76, both hemispheres
7162.7
2256
Male, age 80, left hemisphere
7048.4
2830
Female, age 67, right hemisphere
6476.5
2516
Male, age 75, right hemisphere
5322.3
2255
Female, age 91, right hemisphere
4613.8
2534
Female, age 94, left hemisphere
3304.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3620.2
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 3620.2
Samples: 181
Max nTPM: 18219.6
Min nTPM: 225.5
Std nTPM: 2486.9
Median nTPM: 3177.1
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
18219.6
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
13148.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
12350.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
11390.1
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
10243.3
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
10152.7
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
9422.2
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
9096.2
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
8570.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
8419.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
8260.0
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
7617.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
7544.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
7446.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
7077.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
7059.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
6696.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
6465.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
6392.5
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
6064.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
6062.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
5829.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
5828.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
5560.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
5558.0
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
5433.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
5371.5
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
5331.1
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
5247.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
5203.3
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
5153.9
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
5144.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
5111.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
5068.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
5050.1
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
4919.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
4918.7
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
4881.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
4842.2
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
4841.0
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
4760.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
4752.7
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
4639.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
4535.1
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
4530.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
4479.3
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
4433.1
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
4380.7
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
4333.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
4186.7
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
4183.9
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
4172.1
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
4050.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
3987.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
3973.5
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
3949.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
3937.5
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
3922.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
3922.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
3898.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
3887.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
3828.9
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
3815.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
3747.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
3739.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
3598.7
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
3582.8
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
3545.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
3507.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
3498.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
3453.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
3453.1
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
3448.4
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
3433.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
3427.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
3403.1
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
3350.7
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
3342.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
3325.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
3300.6
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
3297.6
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
3265.7
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
3259.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
3253.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
3253.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
3230.0
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
3217.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
3212.5
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
3211.8
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
3196.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
3177.1
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
3163.7
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
3158.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
3110.1
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
3066.6
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
3061.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
3039.2
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
2974.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
2955.3
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
2941.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
2871.7
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
2860.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
2846.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
2828.9
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
2805.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
2742.5
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
2737.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
2698.4
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
2626.9
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
2578.6
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
2559.1
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
2535.7
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
2501.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
2493.2
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
2474.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
2449.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
2415.3
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
2410.0
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
2395.1
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
2393.3
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
2374.7
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
2345.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
2337.2
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
2321.7
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
2308.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
2293.6
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
2252.0
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
2157.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
2151.1
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
2143.2
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
2117.5
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
2100.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
2063.1
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
2036.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
2028.4
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
1979.9
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
1977.3
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
1958.2
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
1953.3
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
1951.6
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
1916.9
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
1907.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
1899.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
1885.5
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
1852.7
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
1830.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
1816.6
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
1715.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
1682.4
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
1672.4
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
1632.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
1615.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
1583.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
1574.8
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
1559.6
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
1505.7
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
1452.1
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
1400.9
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
1311.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
1292.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
1277.2
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
1252.0
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
1250.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
1250.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
1213.2
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
1183.7
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
1153.7
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
1136.6
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
1136.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
1127.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
1107.2
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
1098.9
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
1053.0
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
1043.4
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
1022.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
966.6
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
794.0
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
779.4
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
723.9
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
511.7
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
225.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1426.6
Pig sample
Sample description
nTPM
Amygdala nTPM: 1426.6
Samples: 4
Max nTPM: 1660.3
Min nTPM: 1113.9
Sample A
Female
1364.7
Sample B
Female
1567.5
Sample C
Male
1113.9
Sample D
Male
1660.3
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
141.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 141.6
Samples: 4
Max nTPM: 165.2
Min nTPM: 119.5
Sample A
Male
145.4
Sample B
Male
136.4
Sample C
Female
119.5
Sample D
Female
165.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
