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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
7352.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 7352.6
1898
Male, age 80, left hemisphere
8240.9
2529
Female, age 94, left hemisphere
8218.5
2148
Female, age 91, left hemisphere
7967.4
1855
Male, age 76, left hemisphere
7548.6
1911
Female, age 85, right hemisphere
6880.2
2621
Female, age 67, right hemisphere
5260.0
Dentate gyrus nTPM: 6558.4
2528
Male, age 74, both hemispheres
9094.6
2530
Female, age 94, left hemisphere
7364.6
2010
Male, age 76, both hemispheres
7199.1
2246
Female, age 85, both hemispheres
5757.8
2531
Female, age 67, both hemispheres
5634.7
1927
Female, age 91, both hemispheres
4299.8
Entorhinal gyrus nTPM: 4484.0
2117
Female, age 91, right hemisphere
10107.4
2686
Male, age 75, right hemisphere
4711.4
1787
Male, age 76, left hemisphere
4240.4
1938
Female, age 85, left hemisphere
3124.3
2764
Male, age 80, right hemisphere
3107.1
2613
Female, age 94, left hemisphere
1613.3
Hippocampus, CA1 nTPM: 5524.1
1873
Female, age 85, both hemispheres
8610.0
2082
Female, age 91, right hemisphere
5678.2
2045
Male, age 76, both hemispheres
5210.1
2527
Male, age 74, both hemispheres
5196.8
2749
Male, age 80, left hemisphere
2925.4
Hippocampus, CA2 nTPM: 5552.7
2437
Female, age 94, left hemisphere
6874.5
2249
Male, age 74, both hemispheres
6468.6
2113
Female, age 91, right hemisphere
6239.5
1963
Male, age 80, left hemisphere
5422.5
1940
Female, age 85, left hemisphere
5190.1
1892
Male, age 76, both hemispheres
3121.0
Hippocampus, CA3 nTPM: 4999.9
2620
Female, age 94, left hemisphere
7012.4
2861
Female, age 67, both hemispheres
6532.4
1891
Female, age 85, both hemispheres
6421.3
2436
Male, age 74, both hemispheres
3768.0
1867
Male, age 76, both hemispheres
3601.0
2137
Male, age 80, left hemisphere
2664.6
Parahippocampal cortex nTPM: 3298.9
2018
Male, age 76, both hemispheres
5290.1
2250
Female, age 67, right hemisphere
4380.8
2692
Male, age 74, both hemispheres
3861.8
2245
Female, age 91, both hemispheres
3412.2
1990
Female, age 91, right hemisphere
3387.1
1933
Female, age 85, both hemispheres
2849.0
1850
Male, age 80, both hemispheres
2824.3
2693
Female, age 94, both hemispheres
2489.5
2622
Female, age 67, right hemisphere
2295.3
2532
Female, age 72, left hemisphere
2198.5
Perirhinal gyrus nTPM: 2775.6
2521
Female, age 94, right hemisphere
3772.7
1794
Male, age 80, right hemisphere
2877.3
1841
Female, age 85, right hemisphere
2472.3
2848
Male, age 76, right hemisphere
2402.5
1847
Female, age 91, left hemisphere
2353.3
Subiculum nTPM: 5699.6
2729
Female, age 91, right hemisphere
11035.2
2042
Male, age 76, both hemispheres
6843.5
2619
Male, age 74, both hemispheres
4758.3
1901
Male, age 80, both hemispheres
4557.1
1977
Female, age 85, both hemispheres
3595.5
2438
Female, age 94, left hemisphere
3408.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4234.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 4234.7
Samples: 255
Max nTPM: 17933.1
Min nTPM: 521.5
Std nTPM: 2327.3
Median nTPM: 3845.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
17933.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
14608.3
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
12209.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
11509.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
10525.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
10451.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
9686.2
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
9540.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
9358.4
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
8880.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
8645.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
8628.1
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
8528.6
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
8203.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
8188.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
8025.7
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
7962.3
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
7468.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
7416.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
7287.2
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
7207.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
7187.2
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
7165.2
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
7127.2
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
7084.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
7056.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
7010.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
6972.4
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
6869.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
6757.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
6730.3
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
6675.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
6660.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
6630.2
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
6519.4
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
6489.4
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
6336.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
6322.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
6259.9
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
6259.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
6200.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
6145.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
6036.7
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
5877.3
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
5855.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
5825.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
5824.2
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
5809.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
5794.4
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
5782.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
5772.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
5770.1
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
5762.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
5736.8
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
5717.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
5690.9
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
5666.9
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
5639.3
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
5574.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
5530.9
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
5501.2
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
5441.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
5435.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
5435.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
5398.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
5370.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
5306.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
5282.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
5224.4
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
5108.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
5075.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
5028.9
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
5020.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
4958.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
4948.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
4944.9
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
4941.1
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
4929.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
4870.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
4865.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
4837.8
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
4836.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
4802.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
4799.0
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
4762.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
4761.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
4712.1
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
4688.1
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
4676.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
4672.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
4656.0
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
4607.5
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
4604.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
4594.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
4546.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
4510.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
4486.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
4446.9
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
4422.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
4420.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
4416.6
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
4405.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
4371.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
4369.1
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
4338.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
4294.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
4279.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
4136.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
4108.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
4093.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
4038.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
4035.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
4012.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
4002.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
3994.1
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
3973.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
3965.4
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
3944.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
3937.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
3930.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
3930.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
3924.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
3877.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
3876.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
3873.4
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
3871.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
3846.3
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
3845.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
3788.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
3786.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
3736.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
3716.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
3671.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
3658.8
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
3648.8
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
3646.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
3638.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
3618.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
3606.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
3587.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
3578.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
3545.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
3486.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
3462.0
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
3436.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
3433.6
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
3423.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
3408.6
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
3402.6
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
3393.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
3361.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
3270.7
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
3260.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
3212.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
3189.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
3188.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
3180.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
3176.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
3155.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
3133.0
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
3130.5
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
3127.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
3127.0
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
3119.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
3103.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
3103.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
3102.3
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
3092.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
3043.1
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
3009.8
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
3004.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
2992.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
2949.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
2934.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
2913.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
2875.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
2863.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
2824.9
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
2822.5
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
2801.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
2774.5
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
2755.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
2751.1
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
2750.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
2745.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
2729.9
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
2671.2
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
2667.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
2667.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
2655.5
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
2652.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
2629.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
2623.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
2621.6
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
2620.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
2588.2
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
2577.3
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
2567.4
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
2542.5
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
2514.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
2510.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
2505.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
2474.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
2463.8
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
2452.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
2440.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
2435.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
2325.7
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
2322.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
2322.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
2320.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
2269.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
2220.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
2197.2
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
2194.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
2125.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
2076.1
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
2075.3
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
2055.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
2054.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
2025.5
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
2021.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
1996.7
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
1988.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
1961.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
1938.7
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
1929.0
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
1917.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
1909.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
1868.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
1840.2
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
1818.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
1800.2
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
1780.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
1779.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
1776.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
1746.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
1580.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
1559.9
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
1479.8
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
1456.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
1413.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
1384.6
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
1373.1
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
1351.4
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
1347.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
1343.1
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
1298.5
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
1253.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
1216.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
1071.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
1011.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
852.9
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
537.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
521.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2579.3
Pig sample
Sample description
nTPM
Subiculum nTPM: 1740.4
Samples: 4
Max nTPM: 2001.7
Min nTPM: 1458.2
Sample A
Female
1685.0
Sample B
Female
2001.7
Sample C
Male
1816.7
Sample D
Male
1458.2
Dorsal hippocampus nTPM: 2485.4
Samples: 4
Max nTPM: 2848.4
Min nTPM: 1857.0
Sample A
Female
2797.0
Sample B
Female
2439.3
Sample C
Male
2848.4
Sample D
Male
1857.0
Entorhinal cortex nTPM: 1134.7
Samples: 4
Max nTPM: 1370.5
Min nTPM: 609.2
Sample A
Female
1370.5
Sample B
Female
1274.3
Sample C
Male
1284.7
Sample D
Male
609.2
Ventral hippocampus nTPM: 2579.3
Samples: 4
Max nTPM: 3375.0
Min nTPM: 1909.4
Sample A
Female
2877.1
Sample B
Female
2155.7
Sample C
Male
3375.0
Sample D
Male
1909.4
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
288.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 166.6
Samples: 4
Max nTPM: 216.3
Min nTPM: 136.5
Sample A
Male
171.5
Sample B
Male
136.5
Sample C
Female
216.3
Sample D
Female
141.9
Hippocampal formation nTPM: 288.5
Samples: 4
Max nTPM: 307.5
Min nTPM: 267.0
Sample A
Male
277.0
Sample B
Male
267.0
Sample C
Female
302.5
Sample D
Female
307.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.