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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
Brain methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

67.196
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:4234.7 nTPM
HPA Brain:7352.6 nTPM
GTEx:4234.7 nTPM
FANTOM5:3985.9 Scaled Tags Per Million
Pig:2579.3 nTPM
Mouse:288.5 nTPM
Allen mouse:3.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA056030Antibody HPA063513Antibody CAB000039
Glial cells MediumLowMedium
Neuronal cells Not detectedNot detectedNot detected







HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody CAB000039
Hippocampal formation mean intensity 67.196
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Polymorph layer of the dentate gyrus 52.374
Molecular layer of the dentate gyrus 40.826
Granular dentate gyrus 40.245
CA1 - oriens layer 45.911
CA1 - pyramidal layer 40.740
CA1 - radiatum layer 45.827
CA2 - oriens layer 56.503
CA2 - pyramidal layer 51.837
CA2 - radiatum layer 49.007
CA3 - oriens layer 47.232
CA3 - pyramidal layer 36.212
CA3 - radiatum layer 62.590
Stratum lucidum 42.625
Lacunosum moleculare 42.647
Subiculum 35.168

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7352.6
Sample id Sample description nTPM
Hippocampus
nTPM: 7352.6
1898 Male, age 80, left hemisphere 8240.9
2529 Female, age 94, left hemisphere 8218.5
2148 Female, age 91, left hemisphere 7967.4
1855 Male, age 76, left hemisphere 7548.6
1911 Female, age 85, right hemisphere 6880.2
2621 Female, age 67, right hemisphere 5260.0
Dentate gyrus
nTPM: 6558.4
2528 Male, age 74, both hemispheres 9094.6
2530 Female, age 94, left hemisphere 7364.6
2010 Male, age 76, both hemispheres 7199.1
2246 Female, age 85, both hemispheres 5757.8
2531 Female, age 67, both hemispheres 5634.7
1927 Female, age 91, both hemispheres 4299.8
Entorhinal gyrus
nTPM: 4484.0
2117 Female, age 91, right hemisphere 10107.4
2686 Male, age 75, right hemisphere 4711.4
1787 Male, age 76, left hemisphere 4240.4
1938 Female, age 85, left hemisphere 3124.3
2764 Male, age 80, right hemisphere 3107.1
2613 Female, age 94, left hemisphere 1613.3
Hippocampus, CA1
nTPM: 5524.1
1873 Female, age 85, both hemispheres 8610.0
2082 Female, age 91, right hemisphere 5678.2
2045 Male, age 76, both hemispheres 5210.1
2527 Male, age 74, both hemispheres 5196.8
2749 Male, age 80, left hemisphere 2925.4
Hippocampus, CA2
nTPM: 5552.7
2437 Female, age 94, left hemisphere 6874.5
2249 Male, age 74, both hemispheres 6468.6
2113 Female, age 91, right hemisphere 6239.5
1963 Male, age 80, left hemisphere 5422.5
1940 Female, age 85, left hemisphere 5190.1
1892 Male, age 76, both hemispheres 3121.0
Hippocampus, CA3
nTPM: 4999.9
2620 Female, age 94, left hemisphere 7012.4
2861 Female, age 67, both hemispheres 6532.4
1891 Female, age 85, both hemispheres 6421.3
2436 Male, age 74, both hemispheres 3768.0
1867 Male, age 76, both hemispheres 3601.0
2137 Male, age 80, left hemisphere 2664.6
Parahippocampal cortex
nTPM: 3298.9
2018 Male, age 76, both hemispheres 5290.1
2250 Female, age 67, right hemisphere 4380.8
2692 Male, age 74, both hemispheres 3861.8
2245 Female, age 91, both hemispheres 3412.2
1990 Female, age 91, right hemisphere 3387.1
1933 Female, age 85, both hemispheres 2849.0
1850 Male, age 80, both hemispheres 2824.3
2693 Female, age 94, both hemispheres 2489.5
2622 Female, age 67, right hemisphere 2295.3
2532 Female, age 72, left hemisphere 2198.5
Perirhinal gyrus
nTPM: 2775.6
2521 Female, age 94, right hemisphere 3772.7
1794 Male, age 80, right hemisphere 2877.3
1841 Female, age 85, right hemisphere 2472.3
2848 Male, age 76, right hemisphere 2402.5
1847 Female, age 91, left hemisphere 2353.3
Subiculum
nTPM: 5699.6
2729 Female, age 91, right hemisphere 11035.2
2042 Male, age 76, both hemispheres 6843.5
2619 Male, age 74, both hemispheres 4758.3
1901 Male, age 80, both hemispheres 4557.1
1977 Female, age 85, both hemispheres 3595.5
2438 Female, age 94, left hemisphere 3408.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4234.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 4234.7
Samples: 255

Max nTPM: 17933.1
Min nTPM: 521.5
Std nTPM: 2327.3
Median nTPM: 3845.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 17933.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 14608.3
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 12209.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 11509.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 10525.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 10451.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 9686.2
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 9540.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 9358.4
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 8880.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 8645.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 8628.1
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 8528.6
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 8203.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 8188.2
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 8025.7
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 7962.3
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 7468.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 7416.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 7287.2
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 7207.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 7187.2
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 7165.2
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 7127.2
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 7084.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 7056.6
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 7010.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 6972.4
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 6869.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 6757.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 6730.3
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 6675.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 6660.5
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 6630.2
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 6519.4
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 6489.4
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 6336.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 6322.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 6259.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 6259.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 6200.5
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 6145.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 6036.7
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 5877.3
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 5855.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 5825.6
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 5824.2
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 5809.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 5794.4
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 5782.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 5772.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 5770.1
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 5762.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 5736.8
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 5717.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 5690.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 5666.9
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 5639.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 5574.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 5530.9
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 5501.2
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 5441.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 5435.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 5435.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 5398.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 5370.7
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 5306.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 5282.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 5224.4
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 5108.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 5075.2
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 5028.9
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 5020.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 4958.5
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 4948.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 4944.9
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 4941.1
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 4929.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 4870.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 4865.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 4837.8
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 4836.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 4802.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 4799.0
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 4762.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 4761.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 4712.1
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 4688.1
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 4676.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 4672.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 4656.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 4607.5
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 4604.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 4594.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 4546.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 4510.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 4486.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 4446.9
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 4422.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 4420.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 4416.6
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 4405.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 4371.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 4369.1
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 4338.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 4294.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 4279.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 4136.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 4108.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 4093.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 4038.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 4035.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 4012.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 4002.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 3994.1
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 3973.7
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 3965.4
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 3944.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 3937.6
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 3930.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 3930.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 3924.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 3877.9
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 3876.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 3873.4
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 3871.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 3846.3
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 3845.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 3788.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 3786.6
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 3736.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 3716.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 3671.2
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 3658.8
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 3648.8
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 3646.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 3638.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 3618.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 3606.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 3587.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 3578.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 3545.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 3486.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 3462.0
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 3436.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 3433.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 3423.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 3408.6
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 3402.6
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 3393.1
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 3361.7
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 3270.7
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 3260.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 3212.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 3189.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 3188.6
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 3180.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 3176.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 3155.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 3133.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 3130.5
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 3127.3
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 3127.0
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 3119.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 3103.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 3103.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 3102.3
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 3092.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 3043.1
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 3009.8
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 3004.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 2992.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 2949.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 2934.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 2913.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 2875.5
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 2863.5
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 2824.9
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 2822.5
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 2801.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 2774.5
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 2755.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 2751.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 2750.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 2745.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 2729.9
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 2671.2
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 2667.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 2667.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 2655.5
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 2652.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 2629.6
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 2623.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 2621.6
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 2620.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 2588.2
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 2577.3
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 2567.4
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 2542.5
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 2514.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 2510.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 2505.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 2474.7
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 2463.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 2452.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 2440.8
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 2435.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 2325.7
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 2322.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 2322.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 2320.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 2269.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 2220.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 2197.2
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 2194.0
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 2125.5
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 2076.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 2075.3
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 2055.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 2054.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 2025.5
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 2021.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 1996.7
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 1988.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 1961.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 1938.7
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 1929.0
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 1917.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 1909.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 1868.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 1840.2
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 1818.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 1800.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 1780.1
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 1779.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 1776.9
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 1746.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 1580.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 1559.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 1479.8
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 1456.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1413.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 1384.6
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 1373.1
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 1351.4
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 1347.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 1343.1
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 1298.5
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 1253.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 1216.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 1071.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 1011.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 852.9
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 537.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 521.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3985.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 3985.9
FF:10153-102I9 76 years, female 5169.8
FF:10169-103B7 60 years, female 2802.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2579.3
Pig sample Sample description nTPM
Subiculum
nTPM: 1740.4
Samples: 4

Max nTPM: 2001.7
Min nTPM: 1458.2
Sample A Female 1685.0
Sample B Female 2001.7
Sample C Male 1816.7
Sample D Male 1458.2
Dorsal hippocampus
nTPM: 2485.4
Samples: 4

Max nTPM: 2848.4
Min nTPM: 1857.0
Sample A Female 2797.0
Sample B Female 2439.3
Sample C Male 2848.4
Sample D Male 1857.0
Entorhinal cortex
nTPM: 1134.7
Samples: 4

Max nTPM: 1370.5
Min nTPM: 609.2
Sample A Female 1370.5
Sample B Female 1274.3
Sample C Male 1284.7
Sample D Male 609.2
Ventral hippocampus
nTPM: 2579.3
Samples: 4

Max nTPM: 3375.0
Min nTPM: 1909.4
Sample A Female 2877.1
Sample B Female 2155.7
Sample C Male 3375.0
Sample D Male 1909.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

288.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 166.6
Samples: 4

Max nTPM: 216.3
Min nTPM: 136.5
Sample A Male 171.5
Sample B Male 136.5
Sample C Female 216.3
Sample D Female 141.9
Hippocampal formation
nTPM: 288.5
Samples: 4

Max nTPM: 307.5
Min nTPM: 267.0
Sample A Male 277.0
Sample B Male 267.0
Sample C Female 302.5
Sample D Female 307.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
1358 Antisense, RP_Baylor_253913, Mouse strain C57BL/6J (56 days, male) 4.3
1357 Antisense, RP_Baylor_253913, Mouse strain C57BL/6J (56 days, male) 4.1
79591671 Antisense, RP_071204_04_G06, Mouse strain C57BL/6J (56 days, male) 3.2
79913385 Antisense, RP_071204_04_G06, Mouse strain C57BL/6J (56 days, male) 2.2

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