On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
7623.8
nTPM
HPA Brain:
16300.0
nTPM
GTEx:
7623.8
nTPM
FANTOM5:
5108.1
Scaled Tags Per Million
Macaque:
2175.4
nTPM
Mouse:
298.5
nTPM
Rat:
292.6
nTPM
Pig:
6303.5
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16300.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 7929.5
2828
Female, age 72, unknown
14518.2
2666
Male, age 74, left hemisphere
10884.5
2586
Male, age 75, left hemisphere
9496.3
1870
Female, age 42, unknown
9090.4
1827
Male, age 72, unknown
8944.9
2411
Female, age 72, unknown
7536.3
1833
Male, age 53, unknown
6252.1
1830
Male, age 51, unknown
5734.4
2219
Male, age 76, both hemispheres
3720.4
2019
Male, age 18, unknown
3117.8
Dorsal raphe nucleus nTPM: 12145.0
2016
Female, age 72, unknown
18348.4
2298
Female, age 72, unknown
12799.3
2047
Male, age 72, unknown
12300.2
1828
Male, age 53, unknown
11858.7
2750
Male, age 76, both hemispheres
5418.7
Inferior colliculus nTPM: 9662.3
2849
Male, age 72, unknown
11137.4
2097
Female, age 72, unknown
10058.0
1848
Female, age 42, unknown
9859.6
1890
Male, age 53, unknown
7594.4
Median raphe nucleus nTPM: 6723.0
2220
Male, age 76, midline
6723.0
Periaquaductal grey, anterior nTPM: 10016.1
1795
Male, age 51, unknown
13214.2
2502
Female, age 75, unknown
9626.8
1947
Male, age 18, unknown
7207.3
Periaquaductal grey, dorsal nTPM: 13836.4
1840
Male, age 53, unknown
16084.0
2850
Male, age 76, both hemispheres
14838.9
1831
Male, age 72, unknown
13206.9
2464
Female, age 72, unknown
11215.8
Periaquaductal grey, lateral nTPM: 16300.0
2053
Male, age 18, unknown
25375.7
2140
Male, age 76, both hemispheres
14469.0
2272
Male, age 74, both hemispheres
9055.4
Pretectal area nTPM: 7984.1
2825
Male, age 18, unknown
14204.2
2273
Male, age 74, both hemispheres
11615.3
2224
Female, age 72, unknown
9816.9
2316
Male, age 76, right hemisphere
9249.1
2407
Male, age 75, both hemispheres
8405.9
1944
Female, age 72, unknown
7847.1
2667
Female, age 75, unknown
6669.0
1815
Male, age 53, unknown
6514.7
1816
Male, age 51, unknown
5277.7
1817
Female, age 42, unknown
4455.1
2007
Male, age 72, unknown
3770.2
Red nucleus nTPM: 6267.4
2503
Female, age 72, unknown
10517.7
2725
Female, age 75, unknown
7500.9
2769
Male, age 72, unknown
7370.3
2227
Male, age 72, unknown
6924.8
2823
Male, age 76, right hemisphere
6019.7
1821
Female, age 72, unknown
5960.0
2584
Male, age 75, left hemisphere
5632.1
2588
Male, age 74, left hemisphere
5535.0
1865
Male, age 51, unknown
5481.2
1954
Female, age 42, unknown
5413.5
1904
Male, age 53, unknown
5156.7
2785
Male, age 18, unknown
3697.1
Substantia nigra nTPM: 7149.4
2699
Male, age 18, unknown
13372.5
1851
Male, age 51, unknown
7903.5
2590
Female, age 75, unknown
7638.7
2583
Male, age 75, right hemisphere
6905.1
1941
Male, age 53, unknown
6685.5
2665
Male, age 74, both hemispheres
6552.2
1916
Female, age 42, unknown
6291.1
1889
Female, age 72, unknown
5867.3
2409
Female, age 72, unknown
5864.2
2241
Male, age 72, unknown
4413.7
Superior colliculus nTPM: 9751.1
1995
Male, age 72, unknown
13799.7
1913
Female, age 42, unknown
13070.3
2664
Male, age 75, both hemispheres
11656.4
1796
Male, age 53, unknown
11133.8
2587
Male, age 74, left hemisphere
9791.2
1839
Male, age 51, unknown
9186.8
2087
Female, age 72, unknown
8486.8
2668
Female, age 75, unknown
7690.4
2261
Male, age 18, unknown
7606.6
1895
Male, age 76, right hemisphere
5089.2
Ventral tegmental area nTPM: 9943.4
2021
Male, age 53, unknown
13157.5
1915
Female, age 42, unknown
12611.8
1942
Male, age 51, unknown
12246.6
2223
Female, age 72, unknown
7622.6
2410
Female, age 72, unknown
7454.2
2218
Male, age 76, both hemispheres
6567.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
7623.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 7623.8
Samples: 183
Max nTPM: 26488.4
Min nTPM: 572.2
Std nTPM: 4184.7
Median nTPM: 6805.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
26488.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
20489.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
19425.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
19345.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
18859.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
16682.8
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
15800.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
15213.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
15078.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
14891.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
14608.8
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
14493.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
13994.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
13979.1
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
13810.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
13651.0
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
13613.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
13497.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
13392.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
13325.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
13224.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
13107.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
12907.4
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
12712.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
12421.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
12147.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
12140.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
12103.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
12019.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
11962.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
11827.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
11777.8
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
11681.2
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
11572.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
11387.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
11049.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
11025.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
10571.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
10558.2
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
10536.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
10517.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
10342.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
10048.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
10046.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
10026.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
9748.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
9676.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
9629.2
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
9600.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
9586.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
9571.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
9483.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
9470.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
9387.1
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
9217.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
8936.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
8823.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
8635.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
8561.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
8551.1
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
8483.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
8425.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
8323.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
8315.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
8270.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
8216.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
8090.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
7874.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
7795.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
7775.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
7715.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
7661.9
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
7654.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
7645.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
7581.6
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
7501.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
7437.9
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
7427.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
7357.6
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
7270.7
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
7243.2
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
7225.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
7192.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
7169.5
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
7130.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
7096.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
7081.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
7063.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
6994.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
6854.2
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
6834.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
6805.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
6774.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
6708.4
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
6553.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
6493.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
6402.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
6346.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
6329.3
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
6310.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
6272.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
6266.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
6248.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
6207.7
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
6156.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
6112.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
6101.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
6101.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
6047.6
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
6044.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
6002.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
5940.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
5902.9
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
5880.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
5772.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
5771.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
5716.5
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
5700.9
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
5688.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
5623.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
5599.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
5580.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
5565.3
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
5512.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
5449.3
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
5444.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
5440.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
5268.3
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
5180.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
5170.4
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
5090.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
4981.4
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
4975.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
4957.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
4875.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
4856.8
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
4800.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
4711.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
4676.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
4554.6
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
4553.8
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
4481.0
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
4461.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
4409.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
4345.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
4300.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
4282.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
4066.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
3999.5
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
3971.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
3912.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
3890.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
3881.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
3738.6
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
3716.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
3632.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
3576.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
3558.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
3496.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
3334.6
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
3283.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
3265.5
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
3110.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
2964.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2836.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
2684.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
2676.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
2656.2
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
2604.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
2560.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
2541.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
2532.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
2480.4
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
2461.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
2409.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
2167.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1798.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1788.7
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
1783.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
1353.5
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
1079.4
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1018.9
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
572.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2175.4
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 1647.1
Samples: 1
Max nTPM: 1647.1
Min nTPM: 1647.1
Sample A
1647.1
Midbrain nTPM: 2175.4
Samples: 1
Max nTPM: 2175.4
Min nTPM: 2175.4
Sample A
2175.4
Superior colliculi nTPM: 1328.5
Samples: 1
Max nTPM: 1328.5
Min nTPM: 1328.5
Sample A
1328.5
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
6303.5
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 6042.4
Samples: 3
Max nTPM: 6405.6
Min nTPM: 5679.8
Sample A
Female
6405.6
Sample B
Female
5679.8
Sample C
Male
6041.8
Midbrain nTPM: 3771.6
Samples: 3
Max nTPM: 5135.2
Min nTPM: 2341.7
Sample B
Female
5135.2
Sample C
Male
3838.0
Sample D
Male
2341.7
Periaqueductal gray nTPM: 6303.5
Samples: 3
Max nTPM: 7756.3
Min nTPM: 5567.2
Sample B
Female
5567.2
Sample C
Male
7756.3
Sample D
Male
5587.1
Superior colliculi nTPM: 3484.3
Samples: 4
Max nTPM: 4196.0
Min nTPM: 2041.7
Sample A
Female
3557.4
Sample B
Female
2041.7
Sample C
Male
4142.0
Sample D
Male
4196.0
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
298.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 298.4
Samples: 4
Max nTPM: 310.4
Min nTPM: 275.8
Sample A
302.2
Sample B
310.4
Sample C
275.8
Sample D
305.4
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
292.6
Rat sample
Sample description
nTPM
Midbrain nTPM: 292.6
Samples: 4
Max nTPM: 322.4
Min nTPM: 271.1
Sample A
295.7
Sample A
271.1
Sample A
281.3
Sample A
322.4
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The Human Protein Atlas project is funded
