A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3067.1
nTPM
Monaco:
458.6
nTPM
Schmiedel:
1316.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3067.1
HPA sample
nTPM
Memory B-cell nTPM: 3067.1
Samples: 6
Max nTPM: 3939.6
Min nTPM: 2283.5
P10809_1017
2655.5
P10809_1025
3437.8
P10809_1044
2283.5
P10809_1063
3187.7
P10809_1092
2898.4
P10809_1105
3939.6
Naive B-cell nTPM: 2804.1
Samples: 6
Max nTPM: 3694.3
Min nTPM: 2145.5
P10809_1011
2291.3
P10809_1029
2876.0
P10809_1048
2145.5
P10809_1067
3122.5
P10809_1091
2694.9
P10809_1104
3694.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
458.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 458.6
Samples: 4
Max nTPM: 760.4
Min nTPM: 136.5
RHH5310_R3677
343.1
RHH5218_R3590
136.5
RHH5247_R3619
760.4
RHH5276_R3648
594.4
Naive B-cell nTPM: 428.6
Samples: 4
Max nTPM: 801.7
Min nTPM: 129.1
RHH5308_R3675
434.9
RHH5216_R3588
129.1
RHH5245_R3617
801.7
RHH5274_R3646
348.8
Non-switched memory B-cell nTPM: 320.6
Samples: 4
Max nTPM: 597.0
Min nTPM: 153.0
RHH5309_R3676
369.0
RHH5217_R3589
163.5
RHH5246_R3618
153.0
RHH5275_R3647
597.0
Plasmablast nTPM: 360.1
Samples: 4
Max nTPM: 502.8
Min nTPM: 207.6
RHH5312_R3679
405.8
RHH5220_R3592
207.6
RHH5249_R3621
324.2
RHH5278_R3650
502.8
Switched memory B-cell nTPM: 311.3
Samples: 4
Max nTPM: 483.8
Min nTPM: 187.9
RHH5311_R3678
339.2
RHH5219_R3591
234.4
RHH5248_R3620
187.9
RHH5277_R3649
483.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1316.0
Schmiedel sample id
TPM
Naive B-cell TPM: 1316.0
Samples: 91
Max TPM: 1647.7
Min TPM: 812.6
B_CELL_NAIVE_1
1647.7
B_CELL_NAIVE_2
1569.0
B_CELL_NAIVE_3
1557.7
B_CELL_NAIVE_4
1554.2
B_CELL_NAIVE_5
1549.0
B_CELL_NAIVE_6
1540.4
B_CELL_NAIVE_7
1536.3
B_CELL_NAIVE_8
1523.7
B_CELL_NAIVE_9
1511.7
B_CELL_NAIVE_10
1504.0
B_CELL_NAIVE_11
1493.7
B_CELL_NAIVE_12
1493.0
B_CELL_NAIVE_13
1485.1
B_CELL_NAIVE_14
1476.7
B_CELL_NAIVE_15
1459.8
B_CELL_NAIVE_16
1458.3
B_CELL_NAIVE_17
1451.3
B_CELL_NAIVE_18
1443.0
B_CELL_NAIVE_19
1439.4
B_CELL_NAIVE_20
1435.6
B_CELL_NAIVE_21
1430.7
B_CELL_NAIVE_22
1422.8
B_CELL_NAIVE_23
1418.9
B_CELL_NAIVE_24
1417.0
B_CELL_NAIVE_25
1406.0
B_CELL_NAIVE_26
1405.6
B_CELL_NAIVE_27
1405.4
B_CELL_NAIVE_28
1403.0
B_CELL_NAIVE_29
1387.0
B_CELL_NAIVE_30
1385.1
B_CELL_NAIVE_31
1384.4
B_CELL_NAIVE_32
1383.8
B_CELL_NAIVE_33
1383.7
B_CELL_NAIVE_34
1383.5
B_CELL_NAIVE_35
1380.0
B_CELL_NAIVE_36
1369.2
B_CELL_NAIVE_37
1352.2
B_CELL_NAIVE_38
1350.9
B_CELL_NAIVE_39
1350.6
B_CELL_NAIVE_40
1345.4
B_CELL_NAIVE_41
1343.3
B_CELL_NAIVE_42
1342.2
B_CELL_NAIVE_43
1342.1
B_CELL_NAIVE_44
1336.3
B_CELL_NAIVE_45
1324.9
B_CELL_NAIVE_46
1322.9
B_CELL_NAIVE_47
1320.3
B_CELL_NAIVE_48
1316.7
B_CELL_NAIVE_49
1315.8
B_CELL_NAIVE_50
1308.9
B_CELL_NAIVE_51
1306.9
B_CELL_NAIVE_52
1305.3
B_CELL_NAIVE_53
1302.2
B_CELL_NAIVE_54
1301.9
B_CELL_NAIVE_55
1301.1
B_CELL_NAIVE_56
1299.0
B_CELL_NAIVE_57
1298.5
B_CELL_NAIVE_58
1296.7
B_CELL_NAIVE_59
1289.0
B_CELL_NAIVE_60
1286.4
B_CELL_NAIVE_61
1278.4
B_CELL_NAIVE_62
1277.1
B_CELL_NAIVE_63
1275.8
B_CELL_NAIVE_64
1275.6
B_CELL_NAIVE_65
1271.6
B_CELL_NAIVE_66
1269.3
B_CELL_NAIVE_67
1259.1
B_CELL_NAIVE_68
1252.6
B_CELL_NAIVE_69
1238.0
B_CELL_NAIVE_70
1234.7
B_CELL_NAIVE_71
1232.2
B_CELL_NAIVE_72
1226.9
B_CELL_NAIVE_73
1226.7
B_CELL_NAIVE_74
1225.9
B_CELL_NAIVE_75
1195.8
B_CELL_NAIVE_76
1195.2
B_CELL_NAIVE_77
1180.6
B_CELL_NAIVE_78
1166.1
B_CELL_NAIVE_79
1148.2
B_CELL_NAIVE_80
1140.3
B_CELL_NAIVE_81
1138.6
B_CELL_NAIVE_82
1097.5
B_CELL_NAIVE_83
1078.4
B_CELL_NAIVE_84
1075.0
B_CELL_NAIVE_85
1060.8
B_CELL_NAIVE_86
1014.1
B_CELL_NAIVE_87
988.0
B_CELL_NAIVE_88
976.1
B_CELL_NAIVE_89
924.5
B_CELL_NAIVE_90
864.6
B_CELL_NAIVE_91
812.6
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