A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1769.7
nTPM
Monaco:
305.9
nTPM
Schmiedel:
844.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1769.7
HPA sample
nTPM
Classical monocyte nTPM: 1769.7
Samples: 6
Max nTPM: 2289.7
Min nTPM: 1215.8
P10809_1003
2289.7
P10809_1020
1551.2
P10809_1039
1215.8
P10809_1058
1883.9
P10809_1080
1624.4
P10809_1107
2053.2
Intermediate monocyte nTPM: 1638.0
Samples: 6
Max nTPM: 2514.5
Min nTPM: 1049.0
P10809_1004
1123.1
P10809_1023
1819.7
P10809_1042
1668.3
P10809_1061
1049.0
P10809_1081
1653.2
P10809_1108
2514.5
Non-classical monocyte nTPM: 1291.8
Samples: 5
Max nTPM: 1878.5
Min nTPM: 903.1
P10809_1005
1154.8
P10809_1053
1230.6
P10809_1072
903.1
P10809_1082
1292.0
P10809_1109
1878.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
305.9
Monaco sample
nTPM
Classical monocyte nTPM: 215.6
Samples: 4
Max nTPM: 292.8
Min nTPM: 152.3
RHH5313_R3680
292.8
RHH5221_R3593
206.5
RHH5250_R3622
152.3
RHH5279_R3651
210.7
Intermediate monocyte nTPM: 305.9
Samples: 4
Max nTPM: 375.6
Min nTPM: 173.8
RHH5314_R3681
302.9
RHH5222_R3594
375.6
RHH5251_R3623
371.4
RHH5280_R3652
173.8
Non-classical monocyte nTPM: 192.3
Samples: 4
Max nTPM: 227.8
Min nTPM: 117.8
RHH5315_R3682
227.8
RHH5223_R3595
207.6
RHH5252_R3624
215.9
RHH5281_R3653
117.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
844.3
Schmiedel sample id
TPM
Classical monocyte TPM: 844.3
Samples: 91
Max TPM: 1024.7
Min TPM: 637.8
MONOCYTES_1
1024.7
MONOCYTES_2
1018.7
MONOCYTES_3
974.9
MONOCYTES_4
952.0
MONOCYTES_5
948.6
MONOCYTES_6
946.5
MONOCYTES_7
944.5
MONOCYTES_8
940.7
MONOCYTES_9
939.9
MONOCYTES_10
938.9
MONOCYTES_11
930.5
MONOCYTES_12
928.4
MONOCYTES_13
923.6
MONOCYTES_14
923.6
MONOCYTES_15
921.8
MONOCYTES_16
920.6
MONOCYTES_17
917.4
MONOCYTES_18
916.5
MONOCYTES_19
914.2
MONOCYTES_20
913.4
MONOCYTES_21
911.4
MONOCYTES_22
907.9
MONOCYTES_23
905.4
MONOCYTES_24
903.5
MONOCYTES_25
900.5
MONOCYTES_26
899.9
MONOCYTES_27
894.7
MONOCYTES_28
889.9
MONOCYTES_29
880.8
MONOCYTES_30
876.4
MONOCYTES_31
876.1
MONOCYTES_32
873.8
MONOCYTES_33
872.7
MONOCYTES_34
872.2
MONOCYTES_35
871.5
MONOCYTES_36
871.0
MONOCYTES_37
869.0
MONOCYTES_38
866.3
MONOCYTES_39
863.1
MONOCYTES_40
860.3
MONOCYTES_41
857.5
MONOCYTES_42
857.3
MONOCYTES_43
852.5
MONOCYTES_44
851.9
MONOCYTES_45
850.6
MONOCYTES_46
849.0
MONOCYTES_47
848.4
MONOCYTES_48
847.7
MONOCYTES_49
843.7
MONOCYTES_50
842.7
MONOCYTES_51
842.1
MONOCYTES_52
840.1
MONOCYTES_53
838.7
MONOCYTES_54
837.5
MONOCYTES_55
835.5
MONOCYTES_56
834.7
MONOCYTES_57
833.8
MONOCYTES_58
832.4
MONOCYTES_59
829.7
MONOCYTES_60
822.0
MONOCYTES_61
821.2
MONOCYTES_62
821.0
MONOCYTES_63
819.3
MONOCYTES_64
815.8
MONOCYTES_65
807.0
MONOCYTES_66
806.8
MONOCYTES_67
806.0
MONOCYTES_68
805.7
MONOCYTES_69
803.8
MONOCYTES_70
802.2
MONOCYTES_71
798.0
MONOCYTES_72
785.4
MONOCYTES_73
782.7
MONOCYTES_74
778.8
MONOCYTES_75
778.7
MONOCYTES_76
767.2
MONOCYTES_77
763.8
MONOCYTES_78
749.5
MONOCYTES_79
748.2
MONOCYTES_80
739.9
MONOCYTES_81
738.6
MONOCYTES_82
737.7
MONOCYTES_83
730.5
MONOCYTES_84
728.7
MONOCYTES_85
706.6
MONOCYTES_86
701.2
MONOCYTES_87
687.3
MONOCYTES_88
677.0
MONOCYTES_89
666.3
MONOCYTES_90
661.4
MONOCYTES_91
637.8
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Non-classical monocyte TPM: 647.0
Samples: 90
Max TPM: 952.9
Min TPM: 386.2
M2_1
952.9
M2_2
801.9
M2_3
790.3
M2_4
780.9
M2_5
766.4
M2_6
764.1
M2_7
753.2
M2_8
751.6
M2_9
750.1
M2_10
749.7
M2_11
745.2
M2_12
738.1
M2_13
735.5
M2_14
730.6
M2_15
729.7
M2_16
725.3
M2_17
724.4
M2_18
720.1
M2_19
715.9
M2_20
715.8
M2_21
711.6
M2_22
710.7
M2_23
709.9
M2_24
700.7
M2_25
695.5
M2_26
693.0
M2_27
691.4
M2_28
690.3
M2_29
688.3
M2_30
688.0
M2_31
686.8
M2_32
686.1
M2_33
684.6
M2_34
683.8
M2_35
682.3
M2_36
677.2
M2_37
672.8
M2_38
672.7
M2_39
664.0
M2_40
661.6
M2_41
660.3
M2_42
657.6
M2_43
655.7
M2_44
655.1
M2_45
652.5
M2_46
649.3
M2_47
649.1
M2_48
648.4
M2_49
644.8
M2_50
644.4
M2_51
644.4
M2_52
641.5
M2_53
641.1
M2_54
639.0
M2_55
637.4
M2_56
635.0
M2_57
633.6
M2_58
633.5
M2_59
631.6
M2_60
628.6
M2_61
628.1
M2_62
616.8
M2_63
611.9
M2_64
611.8
M2_65
603.4
M2_66
599.5
M2_67
589.1
M2_68
585.2
M2_69
584.0
M2_70
582.0
M2_71
581.7
M2_72
578.1
M2_73
568.5
M2_74
568.2
M2_75
566.5
M2_76
548.8
M2_77
548.1
M2_78
546.9
M2_79
544.5
M2_80
541.8
M2_81
535.0
M2_82
534.5
M2_83
513.7
M2_84
507.6
M2_85
493.6
M2_86
483.1
M2_87
480.6
M2_88
457.7
M2_89
457.4
M2_90
386.2
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