A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2160.4
nTPM
Monaco:
164.3
nTPM
Schmiedel:
847.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2160.4
HPA sample
nTPM
NK-cell nTPM: 2160.4
Samples: 6
Max nTPM: 2687.9
Min nTPM: 933.9
P10809_1013
1954.8
P10809_1033
2687.9
P10809_1052
2105.7
P10809_1071
2636.4
P10809_1093
933.9
P10809_1103
2643.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
164.3
Monaco sample
nTPM
NK-cell nTPM: 164.4
Samples: 4
Max nTPM: 176.9
Min nTPM: 148.2
RHH5316_R3683
168.9
RHH5224_R3596
163.4
RHH5253_R3625
176.9
RHH5282_R3654
148.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
847.7
Schmiedel sample id
TPM
NK-cell TPM: 847.7
Samples: 90
Max TPM: 1280.5
Min TPM: 610.1
NK_1
1280.5
NK_2
1101.2
NK_3
1067.8
NK_4
1063.5
NK_5
1035.4
NK_6
1035.2
NK_7
1031.6
NK_8
1024.2
NK_9
1021.6
NK_10
1012.5
NK_11
1002.2
NK_12
1000.7
NK_13
997.8
NK_14
995.8
NK_15
973.0
NK_16
964.1
NK_17
959.0
NK_18
952.3
NK_19
944.7
NK_20
931.0
NK_21
921.9
NK_22
917.9
NK_23
915.2
NK_24
914.3
NK_25
914.0
NK_26
913.3
NK_27
908.4
NK_28
907.5
NK_29
907.4
NK_30
899.3
NK_31
896.3
NK_32
895.8
NK_33
895.6
NK_34
885.3
NK_35
882.8
NK_36
875.5
NK_37
871.1
NK_38
869.0
NK_39
860.7
NK_40
856.2
NK_41
853.7
NK_42
853.6
NK_43
853.4
NK_44
850.5
NK_45
848.5
NK_46
841.8
NK_47
841.8
NK_48
838.8
NK_49
837.8
NK_50
836.7
NK_51
827.8
NK_52
821.1
NK_53
814.1
NK_54
810.7
NK_55
807.4
NK_56
803.7
NK_57
794.6
NK_58
794.1
NK_59
793.3
NK_60
787.9
NK_61
784.9
NK_62
781.1
NK_63
775.0
NK_64
767.7
NK_65
763.4
NK_66
760.8
NK_67
759.7
NK_68
753.2
NK_69
752.0
NK_70
750.3
NK_71
746.6
NK_72
742.9
NK_73
729.4
NK_74
722.2
NK_75
718.7
NK_76
716.2
NK_77
716.0
NK_78
713.0
NK_79
707.2
NK_80
702.2
NK_81
698.9
NK_82
697.4
NK_83
687.6
NK_84
670.1
NK_85
669.1
NK_86
662.7
NK_87
655.4
NK_88
638.4
NK_89
625.1
NK_90
610.1
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