HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:172.6 nTPM
HPA Brain:132.9 nTPM
GTEx:172.6 nTPM
FANTOM5:101.7 Scaled Tags Per Million
Pig:58.1 nTPM
Mouse:33.8 nTPM
Allen mouse:6.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA063247Antibody CAB017450
Glial cells Not detectedLow
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 132.9
Sample id Sample description nTPM
Hippocampus
nTPM: 101.0
2529 Female, age 94, left hemisphere 126.3
1855 Male, age 76, left hemisphere 120.7
1898 Male, age 80, left hemisphere 98.0
2621 Female, age 67, right hemisphere 94.0
1911 Female, age 85, right hemisphere 86.5
2148 Female, age 91, left hemisphere 80.3
Dentate gyrus
nTPM: 103.4
2010 Male, age 76, both hemispheres 168.2
2530 Female, age 94, left hemisphere 110.1
2528 Male, age 74, both hemispheres 89.5
2531 Female, age 67, both hemispheres 87.4
2246 Female, age 85, both hemispheres 85.4
1927 Female, age 91, both hemispheres 79.8
Entorhinal gyrus
nTPM: 88.7
1787 Male, age 76, left hemisphere 106.1
2117 Female, age 91, right hemisphere 97.7
1938 Female, age 85, left hemisphere 95.1
2686 Male, age 75, right hemisphere 88.2
2764 Male, age 80, right hemisphere 81.6
2613 Female, age 94, left hemisphere 63.8
Hippocampus, CA1
nTPM: 132.9
2045 Male, age 76, both hemispheres 234.2
2749 Male, age 80, left hemisphere 149.7
1873 Female, age 85, both hemispheres 98.4
2527 Male, age 74, both hemispheres 97.5
2082 Female, age 91, right hemisphere 84.7
Hippocampus, CA2
nTPM: 108.8
1892 Male, age 76, both hemispheres 199.4
2437 Female, age 94, left hemisphere 99.8
2249 Male, age 74, both hemispheres 95.0
1940 Female, age 85, left hemisphere 89.3
1963 Male, age 80, left hemisphere 89.2
2113 Female, age 91, right hemisphere 79.8
Hippocampus, CA3
nTPM: 123.2
1867 Male, age 76, both hemispheres 228.1
2137 Male, age 80, left hemisphere 135.8
2620 Female, age 94, left hemisphere 100.9
2436 Male, age 74, both hemispheres 100.3
1891 Female, age 85, both hemispheres 91.2
2861 Female, age 67, both hemispheres 83.2
Parahippocampal cortex
nTPM: 103.5
2250 Female, age 67, right hemisphere 169.8
2018 Male, age 76, both hemispheres 167.1
1933 Female, age 85, both hemispheres 103.1
2692 Male, age 74, both hemispheres 97.4
2532 Female, age 72, left hemisphere 91.3
1990 Female, age 91, right hemisphere 88.4
2245 Female, age 91, both hemispheres 85.3
2622 Female, age 67, right hemisphere 84.7
1850 Male, age 80, both hemispheres 79.1
2693 Female, age 94, both hemispheres 68.6
Perirhinal gyrus
nTPM: 92.0
2848 Male, age 76, right hemisphere 118.4
1841 Female, age 85, right hemisphere 103.7
1847 Female, age 91, left hemisphere 93.3
2521 Female, age 94, right hemisphere 76.6
1794 Male, age 80, right hemisphere 67.8
Subiculum
nTPM: 118.2
2042 Male, age 76, both hemispheres 194.0
1901 Male, age 80, both hemispheres 123.1
2438 Female, age 94, left hemisphere 105.7
2619 Male, age 74, both hemispheres 104.8
1977 Female, age 85, both hemispheres 96.5
2729 Female, age 91, right hemisphere 85.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 172.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 172.6
Samples: 255

Max nTPM: 2886.0
Min nTPM: 32.2
Std nTPM: 270.1
Median nTPM: 78.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 2886.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1518.9
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 1328.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 1212.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 1052.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 750.6
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 712.9
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 692.6
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 684.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 675.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 656.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 101.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 101.7
FF:10153-102I9 76 years, female 149.5
FF:10169-103B7 60 years, female 54.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 58.1
Pig sample Sample description nTPM
Subiculum
nTPM: 45.4
Samples: 4

Max nTPM: 52.9
Min nTPM: 36.9
Sample A Female 52.9
Sample B Female 36.9
Sample C Male 43.1
Sample D Male 48.7
Dorsal hippocampus
nTPM: 55.5
Samples: 4

Max nTPM: 66.0
Min nTPM: 49.9
Sample A Female 66.0
Sample B Female 51.9
Sample C Male 54.1
Sample D Male 49.9
Entorhinal cortex
nTPM: 58.1
Samples: 4

Max nTPM: 64.3
Min nTPM: 53.2
Sample A Female 60.8
Sample B Female 64.3
Sample C Male 53.2
Sample D Male 54.1
Ventral hippocampus
nTPM: 48.9
Samples: 4

Max nTPM: 68.7
Min nTPM: 31.4
Sample A Female 42.7
Sample B Female 31.4
Sample C Male 52.8
Sample D Male 68.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 33.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 33.8
Samples: 4

Max nTPM: 37.1
Min nTPM: 29.8
Sample A Male 31.4
Sample B Male 37.1
Sample C Female 29.8
Sample D Female 36.8
Hippocampal formation
nTPM: 28.3
Samples: 4

Max nTPM: 29.9
Min nTPM: 27.4
Sample A Male 29.9
Sample B Male 27.4
Sample C Female 27.4
Sample D Female 28.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 6.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.7
71836748 Antisense, RP_051017_02_A03, Mouse strain C57BL/6J (56 days, male) 9.4
68269050 Antisense, RP_041208_01_G01, Mouse strain C57BL/6J (56 days, male) 4.1

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