On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
165.1
nTPM
HPA Brain:
162.1
nTPM
GTEx:
165.1
nTPM
FANTOM5:
146.5
Scaled Tags Per Million
Macaque:
63.8
nTPM
Mouse:
15.7
nTPM
Rat:
29.4
nTPM
Pig:
115.8
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
12859
Sample
Intensity
Spinal cord_01
14437
Spinal cord_02
11772
Spinal cord_03
13945
Spinal cord_04
15258
Spinal cord_05
15082
Spinal cord_06
9510
Spinal cord_07
10120
Spinal cord_08
9152
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
162.1
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 129.3
2193
Male, age 75, both hemispheres
159.5
2818
Female, age 79, both hemispheres
142.2
2819
Male, age 47, both hemispheres
109.2
2734
Male, age 80, both hemispheres
106.2
Cervical spinal cord, central gray nTPM: 112.6
2565
Male, age 75, midline
123.4
2048
Male, age 55, midline
119.4
2194
Female, age 79, both hemispheres
116.6
1981
Female, age 72, midline
107.4
2816
Male, age 47, midline
96.4
Cervical spinal cord, dorsal horn nTPM: 127.6
2069
Male, age 47, both hemispheres
165.7
2296
Male, age 66, both hemispheres
130.1
1877
Male, age 55, unknown
126.6
2173
Female, age 72, unknown
126.2
2721
Male, age 90, both hemispheres
118.6
2297
Male, age 75, both hemispheres
98.2
Cervical spinal cord, ventral horn nTPM: 130.3
2098
Female, age 72, unknown
154.7
2295
Male, age 66, both hemispheres
152.1
2480
Male, age 75, both hemispheres
133.9
2809
Male, age 90, both hemispheres
122.8
2068
Male, age 55, unknown
111.8
2820
Female, age 79, both hemispheres
106.5
Dorsal funiculus (white matter) nTPM: 162.1
2812
Male, age 66, both hemispheres
206.9
2128
Male, age 75, both hemispheres
191.8
2817
Male, age 47, both hemispheres
163.7
2810
Male, age 90, both hemispheres
125.4
2064
Female, age 79, both hemispheres
122.9
Lateral funiculus (white matter) nTPM: 124.4
2099
Male, age 90, both hemispheres
168.8
2192
Male, age 75, both hemispheres
128.1
2094
Female, age 79, both hemispheres
125.6
2294
Male, age 66, both hemispheres
75.2
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
165.1
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 165.1
Samples: 204
Max nTPM: 2439.2
Min nTPM: 32.2
Std nTPM: 258.9
Median nTPM: 82.5
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
2439.2
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
1714.3
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
1195.6
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
1085.4
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
910.4
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
814.5
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
775.6
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
594.2
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
579.3
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
557.7
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
515.4
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
499.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
491.9
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
467.5
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
461.4
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
457.8
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
410.6
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
405.1
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
386.4
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
370.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
338.3
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
324.1
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
304.3
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
286.4
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
282.2
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
268.8
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
248.7
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
246.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
225.2
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
215.5
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
213.3
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
212.4
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
205.0
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
202.8
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
199.8
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
198.1
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
195.1
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
194.5
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
194.0
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
193.7
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
189.5
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
189.5
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
187.7
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
182.9
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
180.9
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
177.0
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
176.7
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
171.0
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
168.6
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
167.6
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
166.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
166.0
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
164.2
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
163.1
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
159.0
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
153.8
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
152.2
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
151.0
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
150.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
147.4
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
143.8
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
143.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
143.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
139.6
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
137.9
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
137.0
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
135.8
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
133.2
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
132.9
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
131.8
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
130.0
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
129.7
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
129.6
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
128.7
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
127.9
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
125.8
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
124.6
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
117.3
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
114.5
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
113.9
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
113.7
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
112.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
112.1
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
111.7
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
110.9
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
107.6
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
105.8
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
104.0
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
100.4
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
99.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
97.5
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
97.0
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
95.2
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
93.2
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
93.2
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
91.4
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
90.4
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
89.3
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
87.9
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
84.3
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
84.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
83.4
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
81.6
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
81.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
80.6
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
79.2
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
79.1
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
76.0
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
75.4
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
74.6
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
74.4
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
73.0
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
72.6
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
72.3
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
71.7
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
71.7
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
71.7
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
71.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
70.8
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
69.3
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
69.1
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
67.8
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
67.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
66.1
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
66.0
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
65.4
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
65.1
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
64.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
64.1
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
63.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
63.8
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
63.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
63.0
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
62.3
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
61.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
60.3
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
60.2
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
59.8
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
59.4
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
59.2
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
58.8
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
58.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
57.8
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
57.6
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
57.3
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
56.9
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
56.8
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
56.1
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
55.9
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
55.5
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
55.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
55.2
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
55.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
55.0
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
54.3
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
54.3
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
54.2
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
54.1
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
53.1
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
53.0
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
52.8
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
52.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
52.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
52.3
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
52.2
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
52.1
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
51.2
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
51.0
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
49.3
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
49.2
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
49.0
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
48.7
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
48.5
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
47.7
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
47.6
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
47.1
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
46.8
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
46.6
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
46.6
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
45.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
44.9
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
43.5
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
43.1
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
42.6
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
42.4
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
42.3
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
41.7
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
41.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
40.8
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
40.7
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
39.4
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
39.2
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
37.5
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
37.4
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
36.6
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
36.4
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
36.3
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
36.2
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
35.4
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
35.3
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
32.6
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
32.4
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
32.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
32.2
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
63.8
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 48.5
Samples: 2
Max nTPM: 58.3
Min nTPM: 38.6
Sample A
38.6
Sample B
58.3
Ventral spinal cord nTPM: 63.8
Samples: 1
Max nTPM: 63.8
Min nTPM: 63.8
Sample A
63.8
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
115.8
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 115.8
Samples: 4
Max nTPM: 205.3
Min nTPM: 63.4
Sample A
Female
63.4
Sample B
Female
123.3
Sample C
Male
205.3
Sample D
Male
71.0
Ventral spinal cord nTPM: 91.3
Samples: 4
Max nTPM: 127.0
Min nTPM: 73.9
Sample A
Female
73.9
Sample B
Female
79.3
Sample C
Male
127.0
Sample D
Male
85.0
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15.7
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 15.7
Samples: 4
Max nTPM: 17.3
Min nTPM: 14.1
Sample A
14.1
Sample B
14.4
Sample C
17.1
Sample D
17.3
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.4
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 29.4
Samples: 4
Max nTPM: 31.4
Min nTPM: 27.3
Sample A
28.1
Sample A
31.4
Sample A
30.8
Sample A
27.3
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The Human Protein Atlas project is funded
