MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:183.2 nTPM
HPA Brain:151.5 nTPM
GTEx:183.2 nTPM
FANTOM5:268.6 Scaled Tags Per Million
Pig:58.0 nTPM
Mouse:30.0 nTPM
Allen mouse:5.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 151.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 151.5
2219 Male, age 76, both hemispheres 436.3
2586 Male, age 75, left hemisphere 223.7
2411 Female, age 72, unknown 116.5
2666 Male, age 74, left hemisphere 112.6
1827 Male, age 72, unknown 108.7
2019 Male, age 18, unknown 106.4
1870 Female, age 42, unknown 106.0
2828 Female, age 72, unknown 104.4
1830 Male, age 51, unknown 100.1
1833 Male, age 53, unknown 99.9
Dorsal raphe nucleus
nTPM: 113.4
2016 Female, age 72, unknown 143.1
2298 Female, age 72, unknown 134.4
2047 Male, age 72, unknown 119.5
1828 Male, age 53, unknown 104.9
2750 Male, age 76, both hemispheres 65.2
Inferior colliculus
nTPM: 93.5
1848 Female, age 42, unknown 99.3
2097 Female, age 72, unknown 95.4
2849 Male, age 72, unknown 91.0
1890 Male, age 53, unknown 88.4
Median raphe nucleus
nTPM: 108.5
2220 Male, age 76, midline 108.5
Periaquaductal grey, anterior
nTPM: 106.5
1947 Male, age 18, unknown 122.4
1795 Male, age 51, unknown 113.3
2502 Female, age 75, unknown 83.9
Periaquaductal grey, dorsal
nTPM: 98.6
1840 Male, age 53, unknown 107.9
1831 Male, age 72, unknown 107.0
2464 Female, age 72, unknown 96.7
2850 Male, age 76, both hemispheres 82.9
Periaquaductal grey, lateral
nTPM: 94.6
2272 Male, age 74, both hemispheres 99.5
2053 Male, age 18, unknown 97.0
2140 Male, age 76, both hemispheres 87.5
Pretectal area
nTPM: 111.3
2667 Female, age 75, unknown 141.4
1817 Female, age 42, unknown 125.2
2407 Male, age 75, both hemispheres 121.8
1816 Male, age 51, unknown 116.4
2007 Male, age 72, unknown 116.1
1944 Female, age 72, unknown 115.1
1815 Male, age 53, unknown 112.6
2224 Female, age 72, unknown 108.4
2825 Male, age 18, unknown 107.4
2273 Male, age 74, both hemispheres 89.0
2316 Male, age 76, right hemisphere 70.6
Red nucleus
nTPM: 100.3
2584 Male, age 75, left hemisphere 125.4
1865 Male, age 51, unknown 110.2
1821 Female, age 72, unknown 108.9
1954 Female, age 42, unknown 104.6
2588 Male, age 74, left hemisphere 101.8
2785 Male, age 18, unknown 101.8
2503 Female, age 72, unknown 100.6
1904 Male, age 53, unknown 98.6
2769 Male, age 72, unknown 98.0
2227 Male, age 72, unknown 96.7
2725 Female, age 75, unknown 93.4
2823 Male, age 76, right hemisphere 63.8
Substantia nigra
nTPM: 126.3
1851 Male, age 51, unknown 143.9
2241 Male, age 72, unknown 136.7
1916 Female, age 42, unknown 135.7
2409 Female, age 72, unknown 135.5
2583 Male, age 75, right hemisphere 128.6
2699 Male, age 18, unknown 126.6
1889 Female, age 72, unknown 121.9
1941 Male, age 53, unknown 117.0
2665 Male, age 74, both hemispheres 110.0
2590 Female, age 75, unknown 107.0
Superior colliculus
nTPM: 111.9
1796 Male, age 53, unknown 167.9
2668 Female, age 75, unknown 133.2
2664 Male, age 75, both hemispheres 119.0
2261 Male, age 18, unknown 113.1
2087 Female, age 72, unknown 109.6
1995 Male, age 72, unknown 104.2
1913 Female, age 42, unknown 101.3
1839 Male, age 51, unknown 98.7
2587 Male, age 74, left hemisphere 90.0
1895 Male, age 76, right hemisphere 81.7
Ventral tegmental area
nTPM: 106.1
2410 Female, age 72, unknown 129.3
1915 Female, age 42, unknown 127.7
1942 Male, age 51, unknown 105.6
2223 Female, age 72, unknown 104.6
2021 Male, age 53, unknown 95.4
2218 Male, age 76, both hemispheres 74.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 183.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 183.2
Samples: 183

Max nTPM: 1789.2
Min nTPM: 32.2
Std nTPM: 237.5
Median nTPM: 94.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1789.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1259.1
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 1030.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 889.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 888.5
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 827.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 761.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 757.3
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 739.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 729.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 651.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 268.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 268.6
FF:10158-103A5 76 years, female 268.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 58.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.6
Samples: 4

Max nTPM: 64.7
Min nTPM: 39.6
Sample A Female 64.7
Sample B Female 39.6
Sample C Male 53.1
Sample D Male 56.9
Midbrain
nTPM: 55.4
Samples: 4

Max nTPM: 75.3
Min nTPM: 41.1
Sample A Female 75.3
Sample B Female 41.1
Sample C Male 55.0
Sample D Male 50.1
Periaqueductal gray
nTPM: 48.4
Samples: 3

Max nTPM: 54.3
Min nTPM: 40.5
Sample B Female 40.5
Sample C Male 54.3
Sample D Male 50.3
Superior colliculi
nTPM: 58.0
Samples: 4

Max nTPM: 62.6
Min nTPM: 52.8
Sample A Female 61.6
Sample B Female 52.8
Sample C Male 54.8
Sample D Male 62.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 31.8
Min nTPM: 28.4
Sample A Male 28.4
Sample B Male 29.8
Sample C Female 31.8
Sample D Female 30.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
71836748 Antisense, RP_051017_02_A03, Mouse strain C57BL/6J (56 days, male) 8.7
68269050 Antisense, RP_041208_01_G01, Mouse strain C57BL/6J (56 days, male) 1.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo