BETA
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:171.6 nTPM
HPA Brain:140.4 nTPM
GTEx:171.6 nTPM
FANTOM5:75.7 Scaled Tags Per Million
Macaque:32.1 nTPM
Mouse:40.3 nTPM
Rat:25.4 nTPM
Pig:125.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity ND
Sample Intensity
Hippocampal formation_01
 ND
Hippocampal formation_02
 ND
Hippocampal formation_03
 ND
Hippocampal formation_04
 ND
Hippocampal formation_05
 ND
Hippocampal formation_06
 ND

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 140.4
Sample id Sample description nTPM
Dentate gyrus
nTPM: 113.1
2530 Female, age 94, left hemisphere 123.1
2528 Male, age 74, both hemispheres 121.0
2246 Female, age 85, both hemispheres 120.9
2010 Male, age 76, both hemispheres 119.3
1927 Female, age 91, both hemispheres 111.8
2531 Female, age 67, both hemispheres 82.7
Entorhinal gyrus
nTPM: 92.2
2117 Female, age 91, right hemisphere 127.0
1787 Male, age 76, left hemisphere 99.9
1938 Female, age 85, left hemisphere 97.7
2764 Male, age 80, right hemisphere 87.4
2686 Male, age 75, right hemisphere 83.3
2613 Female, age 94, left hemisphere 57.7
Hippocampus, CA1
nTPM: 140.4
2749 Male, age 80, left hemisphere 222.7
2527 Male, age 74, both hemispheres 140.7
1873 Female, age 85, both hemispheres 133.1
2082 Female, age 91, right hemisphere 117.7
2045 Male, age 76, both hemispheres 88.0
Hippocampus, CA2
nTPM: 116.2
1963 Male, age 80, left hemisphere 133.6
2249 Male, age 74, both hemispheres 130.1
1940 Female, age 85, left hemisphere 114.0
2113 Female, age 91, right hemisphere 111.3
2437 Female, age 94, left hemisphere 107.7
1892 Male, age 76, both hemispheres 100.2
Hippocampus, CA3
nTPM: 123.3
2137 Male, age 80, left hemisphere 186.8
2436 Male, age 74, both hemispheres 121.6
1867 Male, age 76, both hemispheres 114.7
1891 Female, age 85, both hemispheres 107.9
2620 Female, age 94, left hemisphere 105.2
2861 Female, age 67, both hemispheres 103.2
Parahippocampal cortex
nTPM: 89.7
2245 Female, age 91, both hemispheres 115.1
2250 Female, age 67, right hemisphere 108.0
1933 Female, age 85, both hemispheres 104.7
2018 Male, age 76, both hemispheres 98.9
2692 Male, age 74, both hemispheres 97.1
2622 Female, age 67, right hemisphere 93.1
1990 Female, age 91, right hemisphere 85.9
1850 Male, age 80, both hemispheres 68.1
2693 Female, age 94, both hemispheres 65.4
2532 Female, age 72, left hemisphere 60.3
Perirhinal gyrus
nTPM: 86.1
1794 Male, age 80, right hemisphere 102.6
1847 Female, age 91, left hemisphere 98.5
2521 Female, age 94, right hemisphere 90.9
1841 Female, age 85, right hemisphere 82.3
2848 Male, age 76, right hemisphere 56.1
Subiculum
nTPM: 112.2
2619 Male, age 74, both hemispheres 129.7
1901 Male, age 80, both hemispheres 128.0
2042 Male, age 76, both hemispheres 116.6
2729 Female, age 91, right hemisphere 112.8
1977 Female, age 85, both hemispheres 93.3
2438 Female, age 94, left hemisphere 92.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 171.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 171.6
Samples: 255

Max nTPM: 371.6
Min nTPM: 46.1
Std nTPM: 56.4
Median nTPM: 168.8
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 371.6
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 355.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 347.9
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 344.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 314.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 304.8
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 298.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 295.2
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 287.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 287.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 286.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 75.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 75.7
FF:10153-102I9 76 years, female 85.0
FF:10169-103B7 60 years, female 66.4

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi 32.1
Macaque sample Sample description nTPM
Subiculum
nTPM: 28.4
Samples: 1

Max nTPM: 28.4
Min nTPM: 28.4
Sample A 28.4
Entorhinal cortex
nTPM: 32.2
Samples: 2

Max nTPM: 41.0
Min nTPM: 23.3
Sample A 23.3
Sample B 41.0
Hippocampal formation
nTPM: 31.2
Samples: 4

Max nTPM: 35.5
Min nTPM: 24.8
Sample A 30.8
Sample B 24.8
Sample C 35.5
Sample D 33.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 125.8
Pig sample Sample description nTPM
Subiculum
nTPM: 125.8
Samples: 4

Max nTPM: 166.7
Min nTPM: 96.3
Sample A Female 166.7
Sample B Female 123.8
Sample C Male 96.3
Sample D Male 116.3
Dorsal hippocampus
nTPM: 96.9
Samples: 4

Max nTPM: 121.8
Min nTPM: 65.5
Sample A Female 121.8
Sample B Female 83.5
Sample C Male 116.8
Sample D Male 65.5
Entorhinal cortex
nTPM: 117.0
Samples: 4

Max nTPM: 151.4
Min nTPM: 103.5
Sample A Female 103.5
Sample B Female 107.2
Sample C Male 151.4
Sample D Male 105.9
Ventral hippocampus
nTPM: 106.2
Samples: 4

Max nTPM: 135.0
Min nTPM: 79.6
Sample A Female 124.4
Sample B Female 85.6
Sample C Male 135.0
Sample D Male 79.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 40.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 40.0
Samples: 4

Max nTPM: 44.9
Min nTPM: 36.5
Sample A 39.6
Sample B 39.0
Sample C 44.9
Sample D 36.5
Hippocampal formation
nTPM: 40.3
Samples: 4

Max nTPM: 51.3
Min nTPM: 34.1
Sample A 51.3
Sample B 37.8
Sample C 34.1
Sample D 38.0

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi 25.4
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 25.4
Samples: 4

Max nTPM: 26.9
Min nTPM: 23.6
Sample A 24.4
Sample A 26.9
Sample A 26.6
Sample B 23.6
Ventral hippocampus
nTPM: 10.4
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.5
Sample A 10.4
Sample A 9.5
Sample A 11.8
Sample A 9.9

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