RAMP1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • RAMP1
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:96.9 nTPM
GTEx:169.8 nTPM
FANTOM5:61.5 Scaled Tags Per Million
Macaque:34.2 nTPM
Pig:190.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - Annotated protein expression
Pending normal tissue analysis

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.9
Sample id Sample description nTPM
Substantia nigra
nTPM: 96.9
2699 Male, age 18, unknown 131.2
1916 Female, age 42, unknown 127.4
1851 Male, age 51, unknown 105.3
1889 Female, age 72, unknown 96.4
2583 Male, age 75, right hemisphere 92.8
2409 Female, age 72, unknown 91.6
2665 Male, age 74, both hemispheres 86.9
2590 Female, age 75, unknown 85.0
1941 Male, age 53, unknown 76.0
2241 Male, age 72, unknown 76.0

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 169.8
Samples: 183

Max nTPM: 523.6
Min nTPM: 45.8
Std nTPM: 76.8
Median nTPM: 156.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 523.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 450.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 428.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 412.7
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 337.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 327.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 326.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 326.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 324.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 317.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 316.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 298.3
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 296.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 280.9
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 279.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 277.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 275.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 274.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 272.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 271.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 269.1
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 265.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 260.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 259.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 255.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 237.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 236.8
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 235.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 233.2
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 232.4
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 229.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 228.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 227.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 225.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 225.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 224.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 217.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 217.5
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 216.0
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 211.8
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 211.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 210.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 210.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 209.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 206.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 205.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 205.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 204.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 201.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 200.7
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 200.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 200.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 194.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 194.8
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 193.2
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 190.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 190.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 189.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 185.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 184.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 184.1
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 181.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 181.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 179.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 177.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 176.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 175.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 174.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 174.8
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 174.7
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 174.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 173.5
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 172.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 171.8
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 170.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 169.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 169.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 168.6
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 168.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 168.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 167.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 165.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 164.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 164.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 164.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 161.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 160.9
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 160.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 159.7
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 158.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 156.9
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 156.9
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 153.9
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 153.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 152.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 152.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 151.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 148.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 148.4
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 148.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 147.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 147.7
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 147.5
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 147.0
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 147.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 146.6
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 146.1
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 145.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 144.0
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 144.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 142.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 141.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 140.0
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 139.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 138.9
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 137.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 136.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 136.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 134.8
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 134.5
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 133.8
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 133.1
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 132.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 130.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 129.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 127.5
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 126.7
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 124.9
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 122.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 121.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 121.6
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 120.4
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 119.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 119.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 119.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 118.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 117.4
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 116.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 116.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 116.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 115.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 115.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 108.4
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 107.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 107.8
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 107.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 105.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 104.6
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 103.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 102.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 100.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 100.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 99.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 97.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 96.6
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 96.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 94.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 94.2
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 93.9
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 93.4
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 92.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 91.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 90.9
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 90.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 90.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 90.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 87.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 85.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 85.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 84.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 83.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 81.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 80.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 75.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 75.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 72.7
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 67.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 67.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 62.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 58.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 51.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 50.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 45.8
Show allShow less

SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

61.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.5
FF:10158-103A5 76 years, female 61.5

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.2
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 34.2
Samples: 1

Max nTPM: 34.2
Min nTPM: 34.2
Sample A 34.2

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 190.9
Samples: 3

Max nTPM: 228.7
Min nTPM: 160.9
Sample A Female 228.7
Sample B Female 160.9
Sample C Male 183.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.