A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.2
nTPM
Monaco:
14.2
nTPM
Schmiedel:
21.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.2
HPA sample
nTPM
Memory B-cell nTPM: 0.3
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.0
P10809_1017
0.9
P10809_1025
0.1
P10809_1044
0.0
P10809_1063
0.2
P10809_1092
0.0
P10809_1105
0.3
Naive B-cell nTPM: 0.2
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.0
P10809_1011
0.4
P10809_1029
0.0
P10809_1048
0.0
P10809_1067
0.3
P10809_1091
0.2
P10809_1104
0.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 14.2
Samples: 4
Max nTPM: 25.8
Min nTPM: 8.7
RHH5310_R3677
10.8
RHH5218_R3590
25.8
RHH5247_R3619
8.7
RHH5276_R3648
11.6
Naive B-cell nTPM: 8.4
Samples: 4
Max nTPM: 14.9
Min nTPM: 5.3
RHH5308_R3675
7.8
RHH5216_R3588
14.9
RHH5245_R3617
5.3
RHH5274_R3646
5.7
Non-switched memory B-cell nTPM: 7.3
Samples: 4
Max nTPM: 11.2
Min nTPM: 2.8
RHH5309_R3676
6.6
RHH5217_R3589
11.2
RHH5246_R3618
2.8
RHH5275_R3647
8.5
Plasmablast nTPM: 5.0
Samples: 4
Max nTPM: 5.8
Min nTPM: 3.5
RHH5312_R3679
5.8
RHH5220_R3592
4.8
RHH5249_R3621
3.5
RHH5278_R3650
5.8
Switched memory B-cell nTPM: 11.6
Samples: 4
Max nTPM: 14.2
Min nTPM: 9.8
RHH5311_R3678
9.8
RHH5219_R3591
10.1
RHH5248_R3620
14.2
RHH5277_R3649
12.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.1
Schmiedel sample id
TPM
Naive B-cell TPM: 21.1
Samples: 91
Max TPM: 36.1
Min TPM: 9.2
B_CELL_NAIVE_1
36.1
B_CELL_NAIVE_2
34.8
B_CELL_NAIVE_3
32.4
B_CELL_NAIVE_4
31.9
B_CELL_NAIVE_5
30.4
B_CELL_NAIVE_6
30.2
B_CELL_NAIVE_7
29.9
B_CELL_NAIVE_8
29.4
B_CELL_NAIVE_9
28.7
B_CELL_NAIVE_10
28.0
B_CELL_NAIVE_11
27.9
B_CELL_NAIVE_12
27.7
B_CELL_NAIVE_13
27.3
B_CELL_NAIVE_14
27.0
B_CELL_NAIVE_15
26.8
B_CELL_NAIVE_16
26.8
B_CELL_NAIVE_17
26.5
B_CELL_NAIVE_18
26.1
B_CELL_NAIVE_19
25.5
B_CELL_NAIVE_20
25.4
B_CELL_NAIVE_21
25.3
B_CELL_NAIVE_22
25.1
B_CELL_NAIVE_23
25.1
B_CELL_NAIVE_24
25.1
B_CELL_NAIVE_25
25.1
B_CELL_NAIVE_26
24.7
B_CELL_NAIVE_27
24.5
B_CELL_NAIVE_28
24.3
B_CELL_NAIVE_29
24.1
B_CELL_NAIVE_30
23.9
B_CELL_NAIVE_31
23.8
B_CELL_NAIVE_32
23.6
B_CELL_NAIVE_33
23.4
B_CELL_NAIVE_34
23.2
B_CELL_NAIVE_35
23.1
B_CELL_NAIVE_36
23.1
B_CELL_NAIVE_37
23.0
B_CELL_NAIVE_38
22.6
B_CELL_NAIVE_39
22.6
B_CELL_NAIVE_40
22.4
B_CELL_NAIVE_41
22.2
B_CELL_NAIVE_42
22.1
B_CELL_NAIVE_43
21.9
B_CELL_NAIVE_44
21.6
B_CELL_NAIVE_45
21.3
B_CELL_NAIVE_46
21.2
B_CELL_NAIVE_47
21.2
B_CELL_NAIVE_48
21.0
B_CELL_NAIVE_49
20.7
B_CELL_NAIVE_50
20.7
B_CELL_NAIVE_51
20.2
B_CELL_NAIVE_52
20.2
B_CELL_NAIVE_53
19.7
B_CELL_NAIVE_54
19.6
B_CELL_NAIVE_55
19.5
B_CELL_NAIVE_56
19.3
B_CELL_NAIVE_57
19.1
B_CELL_NAIVE_58
19.1
B_CELL_NAIVE_59
18.8
B_CELL_NAIVE_60
18.3
B_CELL_NAIVE_61
18.2
B_CELL_NAIVE_62
17.5
B_CELL_NAIVE_63
17.4
B_CELL_NAIVE_64
17.4
B_CELL_NAIVE_65
17.2
B_CELL_NAIVE_66
17.2
B_CELL_NAIVE_67
17.2
B_CELL_NAIVE_68
16.7
B_CELL_NAIVE_69
16.7
B_CELL_NAIVE_70
16.4
B_CELL_NAIVE_71
16.3
B_CELL_NAIVE_72
16.2
B_CELL_NAIVE_73
16.1
B_CELL_NAIVE_74
15.8
B_CELL_NAIVE_75
15.7
B_CELL_NAIVE_76
15.4
B_CELL_NAIVE_77
15.3
B_CELL_NAIVE_78
15.0
B_CELL_NAIVE_79
14.5
B_CELL_NAIVE_80
13.9
B_CELL_NAIVE_81
13.9
B_CELL_NAIVE_82
13.7
B_CELL_NAIVE_83
13.2
B_CELL_NAIVE_84
13.1
B_CELL_NAIVE_85
12.0
B_CELL_NAIVE_86
11.8
B_CELL_NAIVE_87
11.5
B_CELL_NAIVE_88
11.2
B_CELL_NAIVE_89
11.0
B_CELL_NAIVE_90
10.6
B_CELL_NAIVE_91
9.2
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
