A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.9
nTPM
Monaco:
87.4
nTPM
Schmiedel:
279.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.9
HPA sample
nTPM
NK-cell nTPM: 1.9
Samples: 6
Max nTPM: 3.6
Min nTPM: 0.0
P10809_1013
1.4
P10809_1033
1.5
P10809_1052
2.7
P10809_1071
2.3
P10809_1093
0.0
P10809_1103
3.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
87.4
Monaco sample
nTPM
NK-cell nTPM: 87.4
Samples: 4
Max nTPM: 111.2
Min nTPM: 65.4
RHH5316_R3683
65.4
RHH5224_R3596
111.2
RHH5253_R3625
89.1
RHH5282_R3654
83.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
279.5
Schmiedel sample id
TPM
NK-cell TPM: 279.5
Samples: 90
Max TPM: 476.3
Min TPM: 141.1
NK_1
476.3
NK_2
403.2
NK_3
388.9
NK_4
385.8
NK_5
385.4
NK_6
372.3
NK_7
356.0
NK_8
351.3
NK_9
348.3
NK_10
343.0
NK_11
339.9
NK_12
339.6
NK_13
338.8
NK_14
337.3
NK_15
333.8
NK_16
333.8
NK_17
330.0
NK_18
329.6
NK_19
329.1
NK_20
328.4
NK_21
327.8
NK_22
327.4
NK_23
327.1
NK_24
324.7
NK_25
320.9
NK_26
320.8
NK_27
317.4
NK_28
314.3
NK_29
311.9
NK_30
307.4
NK_31
304.5
NK_32
302.2
NK_33
296.3
NK_34
292.3
NK_35
292.2
NK_36
292.2
NK_37
292.0
NK_38
291.8
NK_39
287.0
NK_40
283.3
NK_41
282.1
NK_42
281.4
NK_43
279.3
NK_44
274.9
NK_45
272.4
NK_46
271.9
NK_47
270.9
NK_48
268.8
NK_49
263.7
NK_50
262.6
NK_51
262.4
NK_52
258.6
NK_53
257.3
NK_54
256.5
NK_55
255.4
NK_56
255.0
NK_57
254.5
NK_58
254.3
NK_59
253.7
NK_60
252.8
NK_61
252.3
NK_62
247.5
NK_63
245.3
NK_64
242.5
NK_65
242.4
NK_66
239.4
NK_67
239.1
NK_68
238.2
NK_69
237.2
NK_70
235.3
NK_71
234.8
NK_72
234.2
NK_73
231.0
NK_74
229.4
NK_75
224.4
NK_76
222.4
NK_77
219.8
NK_78
219.6
NK_79
215.9
NK_80
213.9
NK_81
213.3
NK_82
210.2
NK_83
207.5
NK_84
200.5
NK_85
200.3
NK_86
189.1
NK_87
187.7
NK_88
185.7
NK_89
179.4
NK_90
141.1
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