A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.9
nTPM
Monaco:
105.8
nTPM
Schmiedel:
231.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.9
HPA sample
nTPM
Classical monocyte nTPM: 1.4
Samples: 6
Max nTPM: 2.4
Min nTPM: 0.4
P10809_1003
2.4
P10809_1020
0.4
P10809_1039
1.1
P10809_1058
1.2
P10809_1080
1.5
P10809_1107
1.7
Intermediate monocyte nTPM: 2.7
Samples: 6
Max nTPM: 4.0
Min nTPM: 1.6
P10809_1004
4.0
P10809_1023
2.1
P10809_1042
1.6
P10809_1061
3.1
P10809_1081
1.9
P10809_1108
3.7
Non-classical monocyte nTPM: 3.8
Samples: 5
Max nTPM: 5.7
Min nTPM: 1.7
P10809_1005
5.7
P10809_1053
4.2
P10809_1072
1.7
P10809_1082
4.6
P10809_1109
3.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.8
Monaco sample
nTPM
Classical monocyte nTPM: 32.7
Samples: 4
Max nTPM: 49.9
Min nTPM: 19.6
RHH5313_R3680
19.6
RHH5221_R3593
49.9
RHH5250_R3622
31.6
RHH5279_R3651
29.8
Intermediate monocyte nTPM: 68.5
Samples: 4
Max nTPM: 97.6
Min nTPM: 37.6
RHH5314_R3681
37.6
RHH5222_R3594
97.6
RHH5251_R3623
80.1
RHH5280_R3652
58.6
Non-classical monocyte nTPM: 105.8
Samples: 4
Max nTPM: 150.8
Min nTPM: 53.7
RHH5315_R3682
53.7
RHH5223_R3595
150.8
RHH5252_R3624
122.9
RHH5281_R3653
95.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
231.0
Schmiedel sample id
TPM
Classical monocyte TPM: 72.4
Samples: 91
Max TPM: 103.2
Min TPM: 45.0
MONOCYTES_1
103.2
MONOCYTES_2
98.1
MONOCYTES_3
96.5
MONOCYTES_4
95.5
MONOCYTES_5
91.4
MONOCYTES_6
90.1
MONOCYTES_7
89.7
MONOCYTES_8
89.2
MONOCYTES_9
89.1
MONOCYTES_10
88.6
MONOCYTES_11
87.7
MONOCYTES_12
86.2
MONOCYTES_13
85.5
MONOCYTES_14
85.5
MONOCYTES_15
85.2
MONOCYTES_16
84.9
MONOCYTES_17
83.8
MONOCYTES_18
83.3
MONOCYTES_19
81.0
MONOCYTES_20
81.0
MONOCYTES_21
80.9
MONOCYTES_22
80.4
MONOCYTES_23
79.3
MONOCYTES_24
78.0
MONOCYTES_25
78.0
MONOCYTES_26
77.9
MONOCYTES_27
77.8
MONOCYTES_28
77.8
MONOCYTES_29
77.8
MONOCYTES_30
77.2
MONOCYTES_31
77.1
MONOCYTES_32
76.7
MONOCYTES_33
75.9
MONOCYTES_34
74.6
MONOCYTES_35
74.5
MONOCYTES_36
74.4
MONOCYTES_37
73.9
MONOCYTES_38
73.4
MONOCYTES_39
73.2
MONOCYTES_40
73.1
MONOCYTES_41
72.4
MONOCYTES_42
72.3
MONOCYTES_43
72.1
MONOCYTES_44
72.1
MONOCYTES_45
72.1
MONOCYTES_46
72.0
MONOCYTES_47
71.8
MONOCYTES_48
71.5
MONOCYTES_49
71.2
MONOCYTES_50
70.8
MONOCYTES_51
70.7
MONOCYTES_52
70.3
MONOCYTES_53
70.2
MONOCYTES_54
70.2
MONOCYTES_55
69.7
MONOCYTES_56
69.6
MONOCYTES_57
69.6
MONOCYTES_58
69.3
MONOCYTES_59
69.2
MONOCYTES_60
68.5
MONOCYTES_61
67.8
MONOCYTES_62
67.3
MONOCYTES_63
66.3
MONOCYTES_64
66.1
MONOCYTES_65
66.1
MONOCYTES_66
65.9
MONOCYTES_67
65.4
MONOCYTES_68
65.4
MONOCYTES_69
65.3
MONOCYTES_70
64.9
MONOCYTES_71
64.0
MONOCYTES_72
63.4
MONOCYTES_73
62.6
MONOCYTES_74
62.4
MONOCYTES_75
62.3
MONOCYTES_76
61.9
MONOCYTES_77
61.0
MONOCYTES_78
60.3
MONOCYTES_79
60.1
MONOCYTES_80
60.1
MONOCYTES_81
59.4
MONOCYTES_82
59.1
MONOCYTES_83
56.6
MONOCYTES_84
55.6
MONOCYTES_85
55.0
MONOCYTES_86
53.6
MONOCYTES_87
53.4
MONOCYTES_88
51.6
MONOCYTES_89
51.4
MONOCYTES_90
50.0
MONOCYTES_91
45.0
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Non-classical monocyte TPM: 231.0
Samples: 90
Max TPM: 350.1
Min TPM: 132.0
M2_1
350.1
M2_2
341.1
M2_3
301.8
M2_4
299.8
M2_5
294.2
M2_6
283.1
M2_7
277.6
M2_8
276.3
M2_9
274.7
M2_10
273.7
M2_11
271.0
M2_12
267.8
M2_13
267.6
M2_14
267.4
M2_15
267.1
M2_16
265.1
M2_17
263.9
M2_18
263.8
M2_19
263.6
M2_20
262.3
M2_21
260.1
M2_22
259.0
M2_23
258.9
M2_24
256.7
M2_25
255.8
M2_26
255.7
M2_27
253.0
M2_28
252.7
M2_29
252.0
M2_30
251.7
M2_31
250.8
M2_32
250.2
M2_33
249.8
M2_34
248.7
M2_35
248.1
M2_36
248.1
M2_37
247.2
M2_38
246.7
M2_39
246.1
M2_40
245.8
M2_41
244.0
M2_42
243.4
M2_43
243.1
M2_44
242.7
M2_45
238.9
M2_46
238.4
M2_47
238.4
M2_48
236.8
M2_49
236.5
M2_50
235.4
M2_51
232.9
M2_52
231.3
M2_53
230.0
M2_54
229.5
M2_55
228.7
M2_56
228.3
M2_57
222.6
M2_58
222.3
M2_59
220.9
M2_60
220.6
M2_61
219.9
M2_62
219.2
M2_63
216.7
M2_64
207.7
M2_65
203.0
M2_66
201.5
M2_67
195.8
M2_68
192.9
M2_69
192.8
M2_70
187.1
M2_71
187.0
M2_72
185.7
M2_73
185.2
M2_74
182.1
M2_75
181.7
M2_76
181.3
M2_77
181.2
M2_78
181.1
M2_79
178.2
M2_80
177.7
M2_81
173.9
M2_82
170.5
M2_83
168.6
M2_84
166.5
M2_85
160.6
M2_86
160.5
M2_87
160.1
M2_88
159.5
M2_89
145.7
M2_90
132.0
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