BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:330.6 nTPM
HPA Brain:346.7 nTPM
GTEx:330.6 nTPM
FANTOM5:303.7 Scaled Tags Per Million
Pig:10.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 346.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 294.4
1870 Female, age 42, unknown 352.5
2828 Female, age 72, unknown 351.4
2411 Female, age 72, unknown 325.5
1830 Male, age 51, unknown 322.7
1833 Male, age 53, unknown 308.4
2586 Male, age 75, left hemisphere 304.5
1827 Male, age 72, unknown 298.5
2019 Male, age 18, unknown 291.9
2666 Male, age 74, left hemisphere 194.7
2219 Male, age 76, both hemispheres 193.8
Dorsal raphe nucleus
nTPM: 303.6
2298 Female, age 72, unknown 354.6
2016 Female, age 72, unknown 323.4
2750 Male, age 76, both hemispheres 306.6
1828 Male, age 53, unknown 283.3
2047 Male, age 72, unknown 250.0
Inferior colliculus
nTPM: 284.5
1848 Female, age 42, unknown 308.3
1890 Male, age 53, unknown 295.3
2097 Female, age 72, unknown 272.4
2849 Male, age 72, unknown 261.9
Median raphe nucleus
nTPM: 276.4
2220 Male, age 76, midline 276.4
Periaquaductal grey, anterior
nTPM: 304.4
2502 Female, age 75, unknown 332.8
1947 Male, age 18, unknown 295.0
1795 Male, age 51, unknown 285.4
Periaquaductal grey, dorsal
nTPM: 306.3
1831 Male, age 72, unknown 332.5
2850 Male, age 76, both hemispheres 327.1
1840 Male, age 53, unknown 296.4
2464 Female, age 72, unknown 269.4
Periaquaductal grey, lateral
nTPM: 336.2
2272 Male, age 74, both hemispheres 372.1
2140 Male, age 76, both hemispheres 354.7
2053 Male, age 18, unknown 281.9
Pretectal area
nTPM: 293.9
2273 Male, age 74, both hemispheres 378.8
2316 Male, age 76, right hemisphere 375.9
2407 Male, age 75, both hemispheres 326.0
2224 Female, age 72, unknown 310.0
2825 Male, age 18, unknown 309.5
2667 Female, age 75, unknown 284.2
1817 Female, age 42, unknown 281.4
1815 Male, age 53, unknown 277.1
2007 Male, age 72, unknown 266.8
1944 Female, age 72, unknown 217.1
1816 Male, age 51, unknown 206.6
Red nucleus
nTPM: 346.7
2227 Male, age 72, unknown 411.6
1865 Male, age 51, unknown 405.5
2503 Female, age 72, unknown 396.8
1904 Male, age 53, unknown 393.6
2769 Male, age 72, unknown 391.6
2785 Male, age 18, unknown 377.7
1821 Female, age 72, unknown 371.8
1954 Female, age 42, unknown 341.9
2823 Male, age 76, right hemisphere 296.3
2588 Male, age 74, left hemisphere 272.5
2725 Female, age 75, unknown 263.3
2584 Male, age 75, left hemisphere 237.4
Substantia nigra
nTPM: 243.0
2590 Female, age 75, unknown 305.7
2699 Male, age 18, unknown 304.2
1889 Female, age 72, unknown 276.8
1851 Male, age 51, unknown 273.3
1916 Female, age 42, unknown 249.4
2665 Male, age 74, both hemispheres 232.4
2583 Male, age 75, right hemisphere 231.0
1941 Male, age 53, unknown 205.5
2409 Female, age 72, unknown 193.1
2241 Male, age 72, unknown 159.0
Superior colliculus
nTPM: 301.1
1995 Male, age 72, unknown 403.9
1913 Female, age 42, unknown 354.6
1796 Male, age 53, unknown 333.0
2587 Male, age 74, left hemisphere 320.0
1895 Male, age 76, right hemisphere 292.0
1839 Male, age 51, unknown 291.1
2668 Female, age 75, unknown 278.9
2664 Male, age 75, both hemispheres 260.4
2087 Female, age 72, unknown 240.1
2261 Male, age 18, unknown 236.8
Ventral tegmental area
nTPM: 279.4
2410 Female, age 72, unknown 306.7
1915 Female, age 42, unknown 281.4
2223 Female, age 72, unknown 280.3
1942 Male, age 51, unknown 278.5
2218 Male, age 76, both hemispheres 271.8
2021 Male, age 53, unknown 257.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 330.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 330.6
Samples: 183

Max nTPM: 940.3
Min nTPM: 125.1
Std nTPM: 120.7
Median nTPM: 302.5
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 940.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 823.3
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 705.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 688.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 687.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 673.4
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 636.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 628.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 540.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 531.3
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 527.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 303.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 303.7
FF:10158-103A5 76 years, female 303.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.1
Samples: 3

Max nTPM: 8.7
Min nTPM: 1.6
Sample A Female 1.6
Sample B Female 7.9
Sample C Male 8.7
Midbrain
nTPM: 9.1
Samples: 3

Max nTPM: 11.5
Min nTPM: 7.5
Sample B Female 8.2
Sample C Male 7.5
Sample D Male 11.5
Periaqueductal gray
nTPM: 10.8
Samples: 3

Max nTPM: 13.6
Min nTPM: 9.0
Sample B Female 9.8
Sample C Male 9.0
Sample D Male 13.6
Superior colliculi
nTPM: 5.3
Samples: 4

Max nTPM: 7.7
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 5.0
Sample C Male 7.2
Sample D Male 7.7

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