On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
257.8
nTPM
HPA Brain:
670.2
nTPM
GTEx:
257.8
nTPM
FANTOM5:
385.0
Scaled Tags Per Million
Macaque:
189.1
nTPM
Mouse:
197.5
nTPM
Rat:
148.7
nTPM
Pig:
140.6
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
670.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 536.0
2828
Female, age 72, unknown
781.1
2586
Male, age 75, left hemisphere
772.4
2219
Male, age 76, both hemispheres
632.3
2666
Male, age 74, left hemisphere
625.0
1827
Male, age 72, unknown
503.2
1833
Male, age 53, unknown
447.5
1870
Female, age 42, unknown
440.6
1830
Male, age 51, unknown
408.6
2019
Male, age 18, unknown
407.9
2411
Female, age 72, unknown
342.0
Dorsal raphe nucleus nTPM: 529.3
2016
Female, age 72, unknown
684.5
1828
Male, age 53, unknown
596.7
2047
Male, age 72, unknown
517.7
2298
Female, age 72, unknown
450.0
2750
Male, age 76, both hemispheres
397.4
Inferior colliculus nTPM: 469.0
2849
Male, age 72, unknown
571.4
1848
Female, age 42, unknown
479.5
1890
Male, age 53, unknown
462.3
2097
Female, age 72, unknown
362.7
Median raphe nucleus nTPM: 402.5
2220
Male, age 76, midline
402.5
Periaquaductal grey, anterior nTPM: 571.4
1795
Male, age 51, unknown
702.6
2502
Female, age 75, unknown
590.1
1947
Male, age 18, unknown
421.5
Periaquaductal grey, dorsal nTPM: 641.8
2850
Male, age 76, both hemispheres
807.6
1831
Male, age 72, unknown
695.6
1840
Male, age 53, unknown
615.4
2464
Female, age 72, unknown
448.7
Periaquaductal grey, lateral nTPM: 670.2
2053
Male, age 18, unknown
748.6
2140
Male, age 76, both hemispheres
746.5
2272
Male, age 74, both hemispheres
515.4
Pretectal area nTPM: 579.9
2316
Male, age 76, right hemisphere
664.9
2407
Male, age 75, both hemispheres
651.9
2825
Male, age 18, unknown
619.4
2667
Female, age 75, unknown
617.8
1815
Male, age 53, unknown
590.5
1944
Female, age 72, unknown
582.8
1816
Male, age 51, unknown
569.2
2273
Male, age 74, both hemispheres
552.5
2224
Female, age 72, unknown
535.4
1817
Female, age 42, unknown
514.1
2007
Male, age 72, unknown
480.4
Red nucleus nTPM: 496.5
2769
Male, age 72, unknown
547.4
2503
Female, age 72, unknown
545.9
2584
Male, age 75, left hemisphere
526.4
2823
Male, age 76, right hemisphere
524.6
2588
Male, age 74, left hemisphere
520.2
2227
Male, age 72, unknown
503.8
1904
Male, age 53, unknown
499.8
1865
Male, age 51, unknown
495.6
2785
Male, age 18, unknown
469.9
1954
Female, age 42, unknown
448.8
2725
Female, age 75, unknown
447.9
1821
Female, age 72, unknown
428.0
Substantia nigra nTPM: 544.1
2699
Male, age 18, unknown
874.3
2665
Male, age 74, both hemispheres
706.4
2583
Male, age 75, right hemisphere
632.1
1916
Female, age 42, unknown
549.6
1851
Male, age 51, unknown
529.2
2590
Female, age 75, unknown
473.1
1889
Female, age 72, unknown
459.4
1941
Male, age 53, unknown
453.2
2409
Female, age 72, unknown
417.1
2241
Male, age 72, unknown
346.7
Superior colliculus nTPM: 588.8
2664
Male, age 75, both hemispheres
852.1
1995
Male, age 72, unknown
701.0
2668
Female, age 75, unknown
625.5
1913
Female, age 42, unknown
623.3
1796
Male, age 53, unknown
584.2
2587
Male, age 74, left hemisphere
554.8
2087
Female, age 72, unknown
552.5
1839
Male, age 51, unknown
545.8
2261
Male, age 18, unknown
503.0
1895
Male, age 76, right hemisphere
345.7
Ventral tegmental area nTPM: 519.2
2021
Male, age 53, unknown
587.5
1942
Male, age 51, unknown
552.1
1915
Female, age 42, unknown
534.2
2218
Male, age 76, both hemispheres
491.2
2223
Female, age 72, unknown
480.2
2410
Female, age 72, unknown
470.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
257.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 257.8
Samples: 183
Max nTPM: 467.5
Min nTPM: 67.5
Std nTPM: 87.0
Median nTPM: 249.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
467.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
462.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
457.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
455.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
432.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
430.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
422.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
412.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
411.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
405.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
404.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
403.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
394.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
394.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
390.9
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
385.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
384.8
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
378.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
375.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
375.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
375.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
371.2
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
368.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
363.5
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
361.6
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
361.1
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
359.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
358.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
355.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
351.3
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
347.9
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
344.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
340.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
338.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
335.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
332.5
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
332.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
330.5
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
330.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
327.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
326.6
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
324.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
323.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
323.0
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
322.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
321.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
320.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
320.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
319.7
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
318.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
316.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
315.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
312.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
311.9
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
311.5
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
308.6
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
307.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
306.0
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
304.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
299.5
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
296.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
292.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
291.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
291.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
291.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
289.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
286.9
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
283.1
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
283.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
281.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
280.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
277.4
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
276.8
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
272.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
270.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
269.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
265.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
265.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
264.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
262.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
261.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
261.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
260.6
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
260.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
259.8
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
259.4
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
258.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
256.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
255.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
250.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
250.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
249.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
249.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
247.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
246.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
245.0
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
245.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
244.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
244.5
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
243.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
243.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
241.7
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
241.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
240.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
238.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
237.2
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
234.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
231.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
231.5
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
231.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
228.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
227.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
227.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
226.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
224.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
222.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
221.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
220.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
219.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
219.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
217.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
216.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
210.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
208.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
206.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
205.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
204.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
203.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
202.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
202.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
200.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
197.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
197.0
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
195.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
195.1
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
194.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
194.7
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
187.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
184.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
182.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
182.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
179.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
178.6
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
178.4
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
178.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
178.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
176.1
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
175.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
175.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
173.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
173.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
173.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
171.4
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
171.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
170.1
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
169.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
169.4
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
167.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
166.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
162.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
162.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
160.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
159.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
156.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
155.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
152.9
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
149.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
142.2
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
139.2
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
137.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
137.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
133.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
132.1
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
125.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
109.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
109.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
109.6
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
106.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
103.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
101.7
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
81.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
80.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
67.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
189.1
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 134.2
Samples: 1
Max nTPM: 134.2
Min nTPM: 134.2
Sample A
134.2
Midbrain nTPM: 168.9
Samples: 1
Max nTPM: 168.9
Min nTPM: 168.9
Sample A
168.9
Superior colliculi nTPM: 189.1
Samples: 1
Max nTPM: 189.1
Min nTPM: 189.1
Sample A
189.1
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
140.6
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 138.0
Samples: 3
Max nTPM: 159.3
Min nTPM: 117.8
Sample A
Female
136.8
Sample B
Female
117.8
Sample C
Male
159.3
Midbrain nTPM: 140.6
Samples: 3
Max nTPM: 144.6
Min nTPM: 138.4
Sample B
Female
138.4
Sample C
Male
144.6
Sample D
Male
138.7
Periaqueductal gray nTPM: 140.4
Samples: 3
Max nTPM: 149.0
Min nTPM: 127.4
Sample B
Female
144.9
Sample C
Male
149.0
Sample D
Male
127.4
Superior colliculi nTPM: 128.5
Samples: 4
Max nTPM: 157.1
Min nTPM: 78.6
Sample A
Female
139.1
Sample B
Female
78.6
Sample C
Male
139.0
Sample D
Male
157.1
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
197.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 197.5
Samples: 4
Max nTPM: 218.0
Min nTPM: 187.0
Sample A
196.7
Sample B
218.0
Sample C
188.3
Sample D
187.0
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
148.7
Rat sample
Sample description
nTPM
Midbrain nTPM: 148.8
Samples: 4
Max nTPM: 156.5
Min nTPM: 142.8
Sample A
151.5
Sample A
156.5
Sample A
144.2
Sample A
142.8
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The Human Protein Atlas project is funded
