On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
268.3
nTPM
HPA Brain:
548.8
nTPM
GTEx:
268.3
nTPM
FANTOM5:
404.1
Scaled Tags Per Million
Macaque:
102.3
nTPM
Mouse:
138.4
nTPM
Rat:
126.6
nTPM
Pig:
123.2
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
3120
Sample
Intensity
Spinal cord_01
2396
Spinal cord_02
2046
Spinal cord_03
14493
Spinal cord_04
8775
Spinal cord_05
5480
Spinal cord_06
1795
Spinal cord_07
3843
Spinal cord_08
1053
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
548.8
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 453.4
2818
Female, age 79, both hemispheres
502.8
2734
Male, age 80, both hemispheres
502.7
2819
Male, age 47, both hemispheres
423.1
2193
Male, age 75, both hemispheres
385.1
Cervical spinal cord, central gray nTPM: 543.3
2565
Male, age 75, midline
757.9
2816
Male, age 47, midline
540.2
2048
Male, age 55, midline
529.6
2194
Female, age 79, both hemispheres
468.4
1981
Female, age 72, midline
420.5
Cervical spinal cord, dorsal horn nTPM: 397.3
2721
Male, age 90, both hemispheres
465.6
1877
Male, age 55, unknown
461.5
2296
Male, age 66, both hemispheres
436.2
2069
Male, age 47, both hemispheres
357.7
2173
Female, age 72, unknown
346.1
2297
Male, age 75, both hemispheres
316.8
Cervical spinal cord, ventral horn nTPM: 548.8
2480
Male, age 75, both hemispheres
664.1
2809
Male, age 90, both hemispheres
642.9
2295
Male, age 66, both hemispheres
543.7
2820
Female, age 79, both hemispheres
517.6
2098
Female, age 72, unknown
478.1
2068
Male, age 55, unknown
446.4
Dorsal funiculus (white matter) nTPM: 547.2
2064
Female, age 79, both hemispheres
631.0
2817
Male, age 47, both hemispheres
624.3
2812
Male, age 66, both hemispheres
553.6
2810
Male, age 90, both hemispheres
491.0
2128
Male, age 75, both hemispheres
436.3
Lateral funiculus (white matter) nTPM: 367.7
2192
Male, age 75, both hemispheres
442.4
2094
Female, age 79, both hemispheres
426.2
2294
Male, age 66, both hemispheres
318.2
2099
Male, age 90, both hemispheres
284.2
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
268.3
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 268.3
Samples: 204
Max nTPM: 764.7
Min nTPM: 97.7
Std nTPM: 101.2
Median nTPM: 251.1
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
764.7
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
704.4
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
613.5
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
605.8
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
551.5
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
509.6
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
474.9
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
466.8
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
453.6
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
453.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
444.8
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
442.5
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
419.5
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
416.6
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
407.2
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
406.0
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
402.6
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
400.0
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
393.4
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
387.8
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
385.9
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
385.7
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
383.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
379.4
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
376.6
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
373.3
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
373.1
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
368.5
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
365.5
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
361.8
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
361.8
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
361.1
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
355.1
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
354.3
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
352.4
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
348.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
348.7
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
345.3
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
343.9
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
340.8
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
338.7
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
338.6
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
337.6
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
335.1
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
327.7
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
325.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
313.6
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
313.0
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
312.8
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
311.9
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
311.8
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
311.2
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
311.1
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
309.5
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
307.9
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
306.4
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
305.5
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
305.0
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
300.3
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
300.3
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
297.9
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
297.1
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
295.8
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
294.8
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
293.5
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
290.2
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
288.7
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
288.6
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
287.8
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
286.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
286.2
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
285.0
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
283.2
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
282.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
280.0
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
277.8
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
276.9
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
275.7
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
274.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
272.6
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
269.5
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
268.3
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
267.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
267.3
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
266.4
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
265.5
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
264.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
264.1
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
263.8
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
263.8
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
263.1
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
263.0
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
262.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
262.1
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
259.8
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
258.6
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
258.3
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
257.1
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
256.9
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
254.6
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
253.8
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
253.7
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
248.6
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
247.9
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
247.5
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
246.9
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
245.3
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
244.7
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
243.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
242.9
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
242.5
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
241.6
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
241.1
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
239.5
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
238.7
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
238.5
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
237.8
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
237.1
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
236.2
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
235.5
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
235.1
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
234.8
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
231.5
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
231.1
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
230.9
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
229.1
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
228.5
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
228.3
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
228.2
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
227.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
226.9
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
225.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
224.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
224.4
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
224.2
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
222.5
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
222.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
218.9
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
218.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
216.9
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
211.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
210.9
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
210.7
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
208.9
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
207.9
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
206.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
204.3
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
203.9
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
202.2
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
201.3
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
200.8
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
200.5
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
200.0
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
199.0
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
198.1
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
197.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
196.7
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
194.9
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
194.2
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
194.0
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
192.8
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
187.7
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
186.0
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
185.3
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
184.6
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
184.3
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
184.3
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
184.1
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
183.2
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
181.7
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
178.7
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
178.6
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
178.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
177.7
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
176.6
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
174.9
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
173.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
172.7
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
169.2
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
168.8
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
168.8
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
164.8
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
164.6
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
163.3
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
163.0
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
162.2
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
156.7
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
148.2
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
146.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
146.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
145.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
143.9
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
143.7
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
142.6
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
142.2
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
142.0
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
140.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
137.4
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
130.3
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
126.7
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
121.6
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
117.7
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
100.8
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
97.7
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
102.3
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 83.4
Samples: 2
Max nTPM: 129.2
Min nTPM: 37.6
Sample A
37.6
Sample B
129.2
Ventral spinal cord nTPM: 102.3
Samples: 1
Max nTPM: 102.3
Min nTPM: 102.3
Sample A
102.3
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
123.2
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 97.8
Samples: 4
Max nTPM: 119.2
Min nTPM: 72.5
Sample A
Female
113.1
Sample B
Female
86.5
Sample C
Male
72.5
Sample D
Male
119.2
Ventral spinal cord nTPM: 123.2
Samples: 4
Max nTPM: 131.0
Min nTPM: 117.2
Sample A
Female
131.0
Sample B
Female
122.2
Sample C
Male
122.5
Sample D
Male
117.2
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
138.4
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 138.5
Samples: 4
Max nTPM: 161.4
Min nTPM: 115.9
Sample A
115.9
Sample B
161.4
Sample C
139.0
Sample D
137.5
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
126.6
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 126.7
Samples: 4
Max nTPM: 132.4
Min nTPM: 120.9
Sample A
132.4
Sample A
120.9
Sample A
122.9
Sample A
130.4
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The Human Protein Atlas project is funded
