A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.1
nTPM
Monaco:
64.7
nTPM
Schmiedel:
263.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.1
HPA sample
nTPM
Memory B-cell nTPM: 10.1
Samples: 6
Max nTPM: 17.5
Min nTPM: 5.6
P10809_1017
5.6
P10809_1025
6.1
P10809_1044
17.5
P10809_1063
9.8
P10809_1092
12.3
P10809_1105
9.4
Naive B-cell nTPM: 11.0
Samples: 6
Max nTPM: 16.0
Min nTPM: 0.4
P10809_1011
15.2
P10809_1029
11.2
P10809_1048
0.4
P10809_1067
11.5
P10809_1091
12.0
P10809_1104
16.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 28.2
Samples: 4
Max nTPM: 55.7
Min nTPM: 15.7
RHH5310_R3677
15.7
RHH5218_R3590
55.7
RHH5247_R3619
17.1
RHH5276_R3648
24.1
Naive B-cell nTPM: 64.7
Samples: 4
Max nTPM: 122.3
Min nTPM: 41.3
RHH5308_R3675
41.3
RHH5216_R3588
122.3
RHH5245_R3617
48.1
RHH5274_R3646
47.0
Non-switched memory B-cell nTPM: 57.7
Samples: 4
Max nTPM: 116.8
Min nTPM: 20.7
RHH5309_R3676
20.7
RHH5217_R3589
116.8
RHH5246_R3618
66.3
RHH5275_R3647
26.9
Plasmablast nTPM: 25.0
Samples: 4
Max nTPM: 38.1
Min nTPM: 14.3
RHH5312_R3679
18.2
RHH5220_R3592
38.1
RHH5249_R3621
29.5
RHH5278_R3650
14.3
Switched memory B-cell nTPM: 30.6
Samples: 4
Max nTPM: 53.3
Min nTPM: 19.9
RHH5311_R3678
19.9
RHH5219_R3591
53.3
RHH5248_R3620
29.1
RHH5277_R3649
20.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
263.2
Schmiedel sample id
TPM
Naive B-cell TPM: 263.2
Samples: 91
Max TPM: 608.7
Min TPM: 69.6
B_CELL_NAIVE_1
608.7
B_CELL_NAIVE_2
512.7
B_CELL_NAIVE_3
467.9
B_CELL_NAIVE_4
453.5
B_CELL_NAIVE_5
442.8
B_CELL_NAIVE_6
413.6
B_CELL_NAIVE_7
403.8
B_CELL_NAIVE_8
402.4
B_CELL_NAIVE_9
397.8
B_CELL_NAIVE_10
396.7
B_CELL_NAIVE_11
392.6
B_CELL_NAIVE_12
390.9
B_CELL_NAIVE_13
390.5
B_CELL_NAIVE_14
371.0
B_CELL_NAIVE_15
358.5
B_CELL_NAIVE_16
354.7
B_CELL_NAIVE_17
352.0
B_CELL_NAIVE_18
350.3
B_CELL_NAIVE_19
348.7
B_CELL_NAIVE_20
343.7
B_CELL_NAIVE_21
343.0
B_CELL_NAIVE_22
340.6
B_CELL_NAIVE_23
329.1
B_CELL_NAIVE_24
328.6
B_CELL_NAIVE_25
327.7
B_CELL_NAIVE_26
327.1
B_CELL_NAIVE_27
322.9
B_CELL_NAIVE_28
322.4
B_CELL_NAIVE_29
319.0
B_CELL_NAIVE_30
309.0
B_CELL_NAIVE_31
308.1
B_CELL_NAIVE_32
307.7
B_CELL_NAIVE_33
303.4
B_CELL_NAIVE_34
294.8
B_CELL_NAIVE_35
293.0
B_CELL_NAIVE_36
290.4
B_CELL_NAIVE_37
288.1
B_CELL_NAIVE_38
286.9
B_CELL_NAIVE_39
286.6
B_CELL_NAIVE_40
286.4
B_CELL_NAIVE_41
283.9
B_CELL_NAIVE_42
274.8
B_CELL_NAIVE_43
267.2
B_CELL_NAIVE_44
267.1
B_CELL_NAIVE_45
265.8
B_CELL_NAIVE_46
265.7
B_CELL_NAIVE_47
265.6
B_CELL_NAIVE_48
261.4
B_CELL_NAIVE_49
257.0
B_CELL_NAIVE_50
255.7
B_CELL_NAIVE_51
247.8
B_CELL_NAIVE_52
242.5
B_CELL_NAIVE_53
238.9
B_CELL_NAIVE_54
237.5
B_CELL_NAIVE_55
234.0
B_CELL_NAIVE_56
220.2
B_CELL_NAIVE_57
219.3
B_CELL_NAIVE_58
215.0
B_CELL_NAIVE_59
208.1
B_CELL_NAIVE_60
207.7
B_CELL_NAIVE_61
203.8
B_CELL_NAIVE_62
203.2
B_CELL_NAIVE_63
201.7
B_CELL_NAIVE_64
201.6
B_CELL_NAIVE_65
199.9
B_CELL_NAIVE_66
192.0
B_CELL_NAIVE_67
187.6
B_CELL_NAIVE_68
185.0
B_CELL_NAIVE_69
182.5
B_CELL_NAIVE_70
182.2
B_CELL_NAIVE_71
172.7
B_CELL_NAIVE_72
169.1
B_CELL_NAIVE_73
165.0
B_CELL_NAIVE_74
162.8
B_CELL_NAIVE_75
156.2
B_CELL_NAIVE_76
149.7
B_CELL_NAIVE_77
139.3
B_CELL_NAIVE_78
135.8
B_CELL_NAIVE_79
133.1
B_CELL_NAIVE_80
132.2
B_CELL_NAIVE_81
125.4
B_CELL_NAIVE_82
121.4
B_CELL_NAIVE_83
121.0
B_CELL_NAIVE_84
119.0
B_CELL_NAIVE_85
118.8
B_CELL_NAIVE_86
115.6
B_CELL_NAIVE_87
108.3
B_CELL_NAIVE_88
106.8
B_CELL_NAIVE_89
95.2
B_CELL_NAIVE_90
94.9
B_CELL_NAIVE_91
69.6
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