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BETA
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  • RBM38
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:11.1 nTPM
Monaco:64.7 nTPM
Schmiedel:263.2 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

11.1
HPA sample nTPM
Memory B-cell
nTPM: 10.1
Samples: 6

Max nTPM: 17.5
Min nTPM: 5.6
P10809_1017 5.6
P10809_1025 6.1
P10809_1044 17.5
P10809_1063 9.8
P10809_1092 12.3
P10809_1105 9.4
Naive B-cell
nTPM: 11.0
Samples: 6

Max nTPM: 16.0
Min nTPM: 0.4
P10809_1011 15.2
P10809_1029 11.2
P10809_1048 0.4
P10809_1067 11.5
P10809_1091 12.0
P10809_1104 16.0

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

64.7
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 28.2
Samples: 4

Max nTPM: 55.7
Min nTPM: 15.7
RHH5310_R3677 15.7
RHH5218_R3590 55.7
RHH5247_R3619 17.1
RHH5276_R3648 24.1
Naive B-cell
nTPM: 64.7
Samples: 4

Max nTPM: 122.3
Min nTPM: 41.3
RHH5308_R3675 41.3
RHH5216_R3588 122.3
RHH5245_R3617 48.1
RHH5274_R3646 47.0
Non-switched memory B-cell
nTPM: 57.7
Samples: 4

Max nTPM: 116.8
Min nTPM: 20.7
RHH5309_R3676 20.7
RHH5217_R3589 116.8
RHH5246_R3618 66.3
RHH5275_R3647 26.9
Plasmablast
nTPM: 25.0
Samples: 4

Max nTPM: 38.1
Min nTPM: 14.3
RHH5312_R3679 18.2
RHH5220_R3592 38.1
RHH5249_R3621 29.5
RHH5278_R3650 14.3
Switched memory B-cell
nTPM: 30.6
Samples: 4

Max nTPM: 53.3
Min nTPM: 19.9
RHH5311_R3678 19.9
RHH5219_R3591 53.3
RHH5248_R3620 29.1
RHH5277_R3649 20.1

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

263.2
Schmiedel sample id TPM
Naive B-cell
TPM: 263.2
Samples: 91

Max TPM: 608.7
Min TPM: 69.6
B_CELL_NAIVE_1 608.7
B_CELL_NAIVE_2 512.7
B_CELL_NAIVE_3 467.9
B_CELL_NAIVE_4 453.5
B_CELL_NAIVE_5 442.8
B_CELL_NAIVE_6 413.6
B_CELL_NAIVE_7 403.8
B_CELL_NAIVE_8 402.4
B_CELL_NAIVE_9 397.8
B_CELL_NAIVE_10 396.7
B_CELL_NAIVE_11 392.6
B_CELL_NAIVE_12 390.9
B_CELL_NAIVE_13 390.5
B_CELL_NAIVE_14 371.0
B_CELL_NAIVE_15 358.5
B_CELL_NAIVE_16 354.7
B_CELL_NAIVE_17 352.0
B_CELL_NAIVE_18 350.3
B_CELL_NAIVE_19 348.7
B_CELL_NAIVE_20 343.7
B_CELL_NAIVE_21 343.0
B_CELL_NAIVE_22 340.6
B_CELL_NAIVE_23 329.1
B_CELL_NAIVE_24 328.6
B_CELL_NAIVE_25 327.7
B_CELL_NAIVE_26 327.1
B_CELL_NAIVE_27 322.9
B_CELL_NAIVE_28 322.4
B_CELL_NAIVE_29 319.0
B_CELL_NAIVE_30 309.0
B_CELL_NAIVE_31 308.1
B_CELL_NAIVE_32 307.7
B_CELL_NAIVE_33 303.4
B_CELL_NAIVE_34 294.8
B_CELL_NAIVE_35 293.0
B_CELL_NAIVE_36 290.4
B_CELL_NAIVE_37 288.1
B_CELL_NAIVE_38 286.9
B_CELL_NAIVE_39 286.6
B_CELL_NAIVE_40 286.4
B_CELL_NAIVE_41 283.9
B_CELL_NAIVE_42 274.8
B_CELL_NAIVE_43 267.2
B_CELL_NAIVE_44 267.1
B_CELL_NAIVE_45 265.8
B_CELL_NAIVE_46 265.7
B_CELL_NAIVE_47 265.6
B_CELL_NAIVE_48 261.4
B_CELL_NAIVE_49 257.0
B_CELL_NAIVE_50 255.7
B_CELL_NAIVE_51 247.8
B_CELL_NAIVE_52 242.5
B_CELL_NAIVE_53 238.9
B_CELL_NAIVE_54 237.5
B_CELL_NAIVE_55 234.0
B_CELL_NAIVE_56 220.2
B_CELL_NAIVE_57 219.3
B_CELL_NAIVE_58 215.0
B_CELL_NAIVE_59 208.1
B_CELL_NAIVE_60 207.7
B_CELL_NAIVE_61 203.8
B_CELL_NAIVE_62 203.2
B_CELL_NAIVE_63 201.7
B_CELL_NAIVE_64 201.6
B_CELL_NAIVE_65 199.9
B_CELL_NAIVE_66 192.0
B_CELL_NAIVE_67 187.6
B_CELL_NAIVE_68 185.0
B_CELL_NAIVE_69 182.5
B_CELL_NAIVE_70 182.2
B_CELL_NAIVE_71 172.7
B_CELL_NAIVE_72 169.1
B_CELL_NAIVE_73 165.0
B_CELL_NAIVE_74 162.8
B_CELL_NAIVE_75 156.2
B_CELL_NAIVE_76 149.7
B_CELL_NAIVE_77 139.3
B_CELL_NAIVE_78 135.8
B_CELL_NAIVE_79 133.1
B_CELL_NAIVE_80 132.2
B_CELL_NAIVE_81 125.4
B_CELL_NAIVE_82 121.4
B_CELL_NAIVE_83 121.0
B_CELL_NAIVE_84 119.0
B_CELL_NAIVE_85 118.8
B_CELL_NAIVE_86 115.6
B_CELL_NAIVE_87 108.3
B_CELL_NAIVE_88 106.8
B_CELL_NAIVE_89 95.2
B_CELL_NAIVE_90 94.9
B_CELL_NAIVE_91 69.6
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