A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.8
nTPM
Monaco:
45.7
nTPM
Schmiedel:
186.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.8
HPA sample
nTPM
NK-cell nTPM: 8.8
Samples: 6
Max nTPM: 12.1
Min nTPM: 5.0
P10809_1013
6.5
P10809_1033
11.0
P10809_1052
12.1
P10809_1071
7.7
P10809_1093
5.0
P10809_1103
10.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.7
Monaco sample
nTPM
NK-cell nTPM: 45.7
Samples: 4
Max nTPM: 98.2
Min nTPM: 25.5
RHH5316_R3683
29.6
RHH5224_R3596
98.2
RHH5253_R3625
29.5
RHH5282_R3654
25.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
186.9
Schmiedel sample id
TPM
NK-cell TPM: 186.9
Samples: 90
Max TPM: 395.1
Min TPM: 61.8
NK_1
395.1
NK_2
382.3
NK_3
363.0
NK_4
362.1
NK_5
324.3
NK_6
318.3
NK_7
309.7
NK_8
297.7
NK_9
278.7
NK_10
276.1
NK_11
275.0
NK_12
265.2
NK_13
263.0
NK_14
259.8
NK_15
257.9
NK_16
253.9
NK_17
252.8
NK_18
251.8
NK_19
251.1
NK_20
243.2
NK_21
235.1
NK_22
229.7
NK_23
222.7
NK_24
221.1
NK_25
219.5
NK_26
216.9
NK_27
214.2
NK_28
212.6
NK_29
211.0
NK_30
208.9
NK_31
198.6
NK_32
196.4
NK_33
195.4
NK_34
193.8
NK_35
192.5
NK_36
192.2
NK_37
191.6
NK_38
191.1
NK_39
189.3
NK_40
187.4
NK_41
187.0
NK_42
179.9
NK_43
179.9
NK_44
176.1
NK_45
174.8
NK_46
174.6
NK_47
173.0
NK_48
171.8
NK_49
171.5
NK_50
166.8
NK_51
165.5
NK_52
163.6
NK_53
163.4
NK_54
160.1
NK_55
159.1
NK_56
158.7
NK_57
158.7
NK_58
155.4
NK_59
154.2
NK_60
152.7
NK_61
148.6
NK_62
144.4
NK_63
144.3
NK_64
143.6
NK_65
140.5
NK_66
140.1
NK_67
139.3
NK_68
137.2
NK_69
136.6
NK_70
128.4
NK_71
127.4
NK_72
126.2
NK_73
122.6
NK_74
121.8
NK_75
117.0
NK_76
115.4
NK_77
114.3
NK_78
113.3
NK_79
111.2
NK_80
108.9
NK_81
108.2
NK_82
102.7
NK_83
94.9
NK_84
94.8
NK_85
91.7
NK_86
91.7
NK_87
85.9
NK_88
84.5
NK_89
74.5
NK_90
61.8
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