A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.2
nTPM
Monaco:
13.5
nTPM
Schmiedel:
44.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.2
HPA sample
nTPM
Classical monocyte nTPM: 2.2
Samples: 6
Max nTPM: 2.7
Min nTPM: 1.8
P10809_1003
2.0
P10809_1020
2.2
P10809_1039
1.8
P10809_1058
2.2
P10809_1080
2.4
P10809_1107
2.7
Intermediate monocyte nTPM: 4.6
Samples: 6
Max nTPM: 6.0
Min nTPM: 2.6
P10809_1004
4.9
P10809_1023
6.0
P10809_1042
4.2
P10809_1061
3.8
P10809_1081
2.6
P10809_1108
5.9
Non-classical monocyte nTPM: 5.2
Samples: 5
Max nTPM: 8.9
Min nTPM: 0.0
P10809_1005
7.2
P10809_1053
4.7
P10809_1072
0.0
P10809_1082
5.4
P10809_1109
8.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.5
Monaco sample
nTPM
Classical monocyte nTPM: 3.4
Samples: 4
Max nTPM: 6.6
Min nTPM: 1.7
RHH5313_R3680
6.6
RHH5221_R3593
2.8
RHH5250_R3622
1.7
RHH5279_R3651
2.7
Intermediate monocyte nTPM: 13.5
Samples: 4
Max nTPM: 28.8
Min nTPM: 7.5
RHH5314_R3681
9.5
RHH5222_R3594
8.3
RHH5251_R3623
28.8
RHH5280_R3652
7.5
Non-classical monocyte nTPM: 8.4
Samples: 4
Max nTPM: 11.9
Min nTPM: 5.2
RHH5315_R3682
11.9
RHH5223_R3595
6.0
RHH5252_R3624
10.5
RHH5281_R3653
5.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.4
Schmiedel sample id
TPM
Classical monocyte TPM: 37.9
Samples: 91
Max TPM: 89.5
Min TPM: 14.3
MONOCYTES_1
89.5
MONOCYTES_2
72.2
MONOCYTES_3
69.0
MONOCYTES_4
64.6
MONOCYTES_5
63.0
MONOCYTES_6
61.1
MONOCYTES_7
60.3
MONOCYTES_8
59.3
MONOCYTES_9
59.1
MONOCYTES_10
57.5
MONOCYTES_11
57.4
MONOCYTES_12
56.3
MONOCYTES_13
54.8
MONOCYTES_14
52.9
MONOCYTES_15
51.7
MONOCYTES_16
51.6
MONOCYTES_17
51.0
MONOCYTES_18
48.5
MONOCYTES_19
48.5
MONOCYTES_20
48.2
MONOCYTES_21
48.1
MONOCYTES_22
47.2
MONOCYTES_23
46.8
MONOCYTES_24
46.4
MONOCYTES_25
46.3
MONOCYTES_26
46.2
MONOCYTES_27
45.7
MONOCYTES_28
45.4
MONOCYTES_29
41.8
MONOCYTES_30
41.7
MONOCYTES_31
41.2
MONOCYTES_32
41.1
MONOCYTES_33
40.9
MONOCYTES_34
40.4
MONOCYTES_35
39.6
MONOCYTES_36
38.8
MONOCYTES_37
38.1
MONOCYTES_38
37.8
MONOCYTES_39
37.2
MONOCYTES_40
37.0
MONOCYTES_41
36.1
MONOCYTES_42
36.1
MONOCYTES_43
35.9
MONOCYTES_44
35.9
MONOCYTES_45
35.7
MONOCYTES_46
35.4
MONOCYTES_47
35.4
MONOCYTES_48
35.2
MONOCYTES_49
33.2
MONOCYTES_50
32.9
MONOCYTES_51
32.3
MONOCYTES_52
32.2
MONOCYTES_53
32.1
MONOCYTES_54
32.1
MONOCYTES_55
31.4
MONOCYTES_56
31.1
MONOCYTES_57
31.0
MONOCYTES_58
30.9
MONOCYTES_59
30.8
MONOCYTES_60
30.7
MONOCYTES_61
30.6
MONOCYTES_62
30.5
MONOCYTES_63
29.9
MONOCYTES_64
29.8
MONOCYTES_65
29.4
MONOCYTES_66
29.4
MONOCYTES_67
29.1
MONOCYTES_68
27.8
MONOCYTES_69
27.7
MONOCYTES_70
26.7
MONOCYTES_71
26.6
MONOCYTES_72
26.2
MONOCYTES_73
26.2
MONOCYTES_74
26.1
MONOCYTES_75
25.7
MONOCYTES_76
25.2
MONOCYTES_77
25.0
MONOCYTES_78
24.6
MONOCYTES_79
23.0
MONOCYTES_80
22.7
MONOCYTES_81
22.6
MONOCYTES_82
22.6
MONOCYTES_83
22.4
MONOCYTES_84
21.7
MONOCYTES_85
20.9
MONOCYTES_86
19.5
MONOCYTES_87
18.3
MONOCYTES_88
17.9
MONOCYTES_89
17.7
MONOCYTES_90
16.0
MONOCYTES_91
14.3
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Non-classical monocyte TPM: 44.4
Samples: 90
Max TPM: 92.2
Min TPM: 12.8
M2_1
92.2
M2_2
86.5
M2_3
85.8
M2_4
81.9
M2_5
80.7
M2_6
75.8
M2_7
73.6
M2_8
71.2
M2_9
70.7
M2_10
70.5
M2_11
70.2
M2_12
69.3
M2_13
68.6
M2_14
66.5
M2_15
64.7
M2_16
60.1
M2_17
58.2
M2_18
57.8
M2_19
57.3
M2_20
56.0
M2_21
55.4
M2_22
55.1
M2_23
54.3
M2_24
54.1
M2_25
51.6
M2_26
50.8
M2_27
50.3
M2_28
50.1
M2_29
49.5
M2_30
49.3
M2_31
48.5
M2_32
48.4
M2_33
48.2
M2_34
47.3
M2_35
46.8
M2_36
46.4
M2_37
45.8
M2_38
45.2
M2_39
44.7
M2_40
43.8
M2_41
43.6
M2_42
43.3
M2_43
43.2
M2_44
42.4
M2_45
42.3
M2_46
42.1
M2_47
41.7
M2_48
40.9
M2_49
40.2
M2_50
40.2
M2_51
39.4
M2_52
38.5
M2_53
38.3
M2_54
37.6
M2_55
37.0
M2_56
35.0
M2_57
34.8
M2_58
34.7
M2_59
33.8
M2_60
33.5
M2_61
33.5
M2_62
33.4
M2_63
33.2
M2_64
32.8
M2_65
32.8
M2_66
32.4
M2_67
31.8
M2_68
31.8
M2_69
31.0
M2_70
30.9
M2_71
29.6
M2_72
29.1
M2_73
29.1
M2_74
28.7
M2_75
28.7
M2_76
27.8
M2_77
27.2
M2_78
26.8
M2_79
26.5
M2_80
26.1
M2_81
24.5
M2_82
24.4
M2_83
23.8
M2_84
22.9
M2_85
22.8
M2_86
22.3
M2_87
21.1
M2_88
19.6
M2_89
17.0
M2_90
12.8
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